Experiment: P. phyto corn MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03765 and BPHYT_RS03770 are separated by 134 nucleotides BPHYT_RS03770 and BPHYT_RS03775 are separated by 342 nucleotides BPHYT_RS03775 and BPHYT_RS03780 are separated by 150 nucleotides
BPHYT_RS03765: BPHYT_RS03765 - membrane protein, at 850,720 to 851,106
_RS03765
BPHYT_RS03770: BPHYT_RS03770 - membrane protein, at 851,241 to 851,543
_RS03770
BPHYT_RS03775: BPHYT_RS03775 - peroxidase, at 851,886 to 852,524
_RS03775
BPHYT_RS03780: BPHYT_RS03780 - acyl-CoA dehydrogenase, at 852,675 to 853,865
_RS03780
Position (kb) 851
852
853 Strain fitness (log2 ratio) -1
0
1 at 851.070 kb on + strand at 851.659 kb on + strand at 851.660 kb on - strand at 851.707 kb on + strand at 851.707 kb on + strand at 851.708 kb on - strand at 851.708 kb on - strand at 851.743 kb on - strand at 851.770 kb on - strand at 851.770 kb on - strand at 851.774 kb on + strand at 851.774 kb on + strand at 851.775 kb on - strand at 851.798 kb on + strand at 851.799 kb on - strand at 851.799 kb on - strand at 851.799 kb on - strand at 851.822 kb on - strand at 851.873 kb on + strand at 851.873 kb on + strand at 851.874 kb on - strand at 851.893 kb on + strand at 851.894 kb on - strand at 851.972 kb on + strand, within BPHYT_RS03775 at 851.972 kb on + strand, within BPHYT_RS03775 at 851.972 kb on + strand, within BPHYT_RS03775 at 851.973 kb on - strand, within BPHYT_RS03775 at 851.973 kb on - strand, within BPHYT_RS03775 at 851.973 kb on - strand, within BPHYT_RS03775 at 852.138 kb on - strand, within BPHYT_RS03775 at 852.301 kb on - strand, within BPHYT_RS03775 at 852.475 kb on - strand at 852.477 kb on - strand at 852.477 kb on - strand at 852.523 kb on - strand at 852.532 kb on + strand at 852.737 kb on + strand at 852.745 kb on + strand at 852.746 kb on - strand at 852.746 kb on - strand at 852.746 kb on - strand at 853.039 kb on + strand, within BPHYT_RS03780 at 853.099 kb on + strand, within BPHYT_RS03780 at 853.100 kb on - strand, within BPHYT_RS03780 at 853.382 kb on - strand, within BPHYT_RS03780 at 853.495 kb on + strand, within BPHYT_RS03780 at 853.495 kb on + strand, within BPHYT_RS03780
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto corn MOI 1 remove 851,070 + +1.0 851,659 + -1.1 851,660 - +0.6 851,707 + -0.3 851,707 + +0.5 851,708 - -0.4 851,708 - +0.0 851,743 - +0.3 851,770 - +0.5 851,770 - +0.4 851,774 + +1.5 851,774 + +0.9 851,775 - +0.7 851,798 + -0.3 851,799 - +0.5 851,799 - -0.4 851,799 - +1.0 851,822 - +0.3 851,873 + +1.1 851,873 + -0.5 851,874 - +0.6 851,893 + +1.7 851,894 - +1.2 851,972 + BPHYT_RS03775 0.13 -0.5 851,972 + BPHYT_RS03775 0.13 -1.5 851,972 + BPHYT_RS03775 0.13 +0.2 851,973 - BPHYT_RS03775 0.14 +0.4 851,973 - BPHYT_RS03775 0.14 +0.0 851,973 - BPHYT_RS03775 0.14 +0.3 852,138 - BPHYT_RS03775 0.39 +0.7 852,301 - BPHYT_RS03775 0.65 +0.3 852,475 - +0.4 852,477 - -0.6 852,477 - -0.1 852,523 - +1.4 852,532 + +0.2 852,737 + -0.6 852,745 + +0.3 852,746 - -0.5 852,746 - -0.8 852,746 - +1.4 853,039 + BPHYT_RS03780 0.31 +0.6 853,099 + BPHYT_RS03780 0.36 +0.3 853,100 - BPHYT_RS03780 0.36 -1.7 853,382 - BPHYT_RS03780 0.59 -0.5 853,495 + BPHYT_RS03780 0.69 +1.4 853,495 + BPHYT_RS03780 0.69 +0.7
Or see this region's nucleotide sequence