Experiment: P. phyto corn MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01170 and BPHYT_RS01180 are separated by 426 nucleotides BPHYT_RS01180 and BPHYT_RS01185 are separated by 105 nucleotides
BPHYT_RS01170: BPHYT_RS01170 - hypothetical protein, at 270,415 to 270,657
_RS01170
BPHYT_RS01180: BPHYT_RS01180 - AraC family transcriptional regulator, at 271,084 to 271,878
_RS01180
BPHYT_RS01185: BPHYT_RS01185 - sodium:sulfate symporter, at 271,984 to 273,444
_RS01185
Position (kb) 271
272 Strain fitness (log2 ratio) -2
-1
0
1
2 at 270.151 kb on + strand at 270.151 kb on + strand at 270.152 kb on - strand at 270.223 kb on - strand at 270.223 kb on - strand at 270.368 kb on + strand at 270.368 kb on + strand at 270.368 kb on + strand at 270.541 kb on + strand, within BPHYT_RS01170 at 270.542 kb on - strand, within BPHYT_RS01170 at 270.544 kb on - strand, within BPHYT_RS01170 at 270.544 kb on - strand, within BPHYT_RS01170 at 270.835 kb on + strand at 270.836 kb on - strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.922 kb on + strand at 270.923 kb on - strand at 270.923 kb on - strand at 270.924 kb on + strand at 270.924 kb on + strand at 270.925 kb on - strand at 270.925 kb on - strand at 270.925 kb on - strand at 270.925 kb on - strand at 270.925 kb on - strand at 271.001 kb on - strand at 271.059 kb on - strand at 271.607 kb on + strand, within BPHYT_RS01180 at 271.607 kb on + strand, within BPHYT_RS01180 at 271.761 kb on + strand, within BPHYT_RS01180 at 271.931 kb on + strand at 271.932 kb on - strand at 272.128 kb on + strand at 272.129 kb on - strand at 272.129 kb on - strand at 272.419 kb on + strand, within BPHYT_RS01185 at 272.420 kb on - strand, within BPHYT_RS01185 at 272.420 kb on - strand, within BPHYT_RS01185 at 272.599 kb on + strand, within BPHYT_RS01185 at 272.599 kb on + strand, within BPHYT_RS01185 at 272.599 kb on + strand, within BPHYT_RS01185 at 272.599 kb on + strand at 272.599 kb on + strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.600 kb on - strand, within BPHYT_RS01185 at 272.601 kb on + strand, within BPHYT_RS01185 at 272.671 kb on + strand, within BPHYT_RS01185 at 272.689 kb on + strand, within BPHYT_RS01185 at 272.698 kb on + strand, within BPHYT_RS01185 at 272.698 kb on + strand, within BPHYT_RS01185 at 272.699 kb on - strand, within BPHYT_RS01185
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto corn MOI 1 remove 270,151 + -0.2 270,151 + +1.0 270,152 - -1.5 270,223 - +0.0 270,223 - -1.8 270,368 + -0.7 270,368 + -0.3 270,368 + +0.4 270,541 + BPHYT_RS01170 0.52 +0.4 270,542 - BPHYT_RS01170 0.52 -0.5 270,544 - BPHYT_RS01170 0.53 +0.4 270,544 - BPHYT_RS01170 0.53 -0.6 270,835 + -0.4 270,836 - -0.1 270,922 + -1.0 270,922 + -0.2 270,922 + -0.4 270,922 + +1.9 270,922 + +0.2 270,922 + -1.2 270,922 + -0.6 270,923 - -1.3 270,923 - +0.6 270,924 + -0.5 270,924 + +1.2 270,925 - -0.8 270,925 - +1.0 270,925 - -0.6 270,925 - +1.9 270,925 - -1.1 271,001 - -0.1 271,059 - +0.7 271,607 + BPHYT_RS01180 0.66 -1.1 271,607 + BPHYT_RS01180 0.66 -0.8 271,761 + BPHYT_RS01180 0.85 -0.6 271,931 + +0.6 271,932 - +0.5 272,128 + -0.3 272,129 - +0.0 272,129 - -0.1 272,419 + BPHYT_RS01185 0.30 -1.5 272,420 - BPHYT_RS01185 0.30 +1.0 272,420 - BPHYT_RS01185 0.30 -1.1 272,599 + BPHYT_RS01185 0.42 -0.2 272,599 + BPHYT_RS01185 0.42 -1.3 272,599 + BPHYT_RS01185 0.42 -0.8 272,599 + +2.1 272,599 + BPHYT_RS01185 0.42 -0.4 272,600 - BPHYT_RS01185 0.42 -0.0 272,600 - BPHYT_RS01185 0.42 -0.4 272,600 - BPHYT_RS01185 0.42 -1.9 272,600 - BPHYT_RS01185 0.42 -0.3 272,601 + BPHYT_RS01185 0.42 -0.5 272,671 + BPHYT_RS01185 0.47 -2.4 272,689 + BPHYT_RS01185 0.48 +1.9 272,698 + BPHYT_RS01185 0.49 -0.9 272,698 + BPHYT_RS01185 0.49 -2.1 272,699 - BPHYT_RS01185 0.49 -0.2
Or see this region's nucleotide sequence