Experiment: P. phyto corn MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00975 and BPHYT_RS00980 are separated by 9 nucleotides BPHYT_RS00980 and BPHYT_RS00985 are separated by 21 nucleotides BPHYT_RS00985 and BPHYT_RS00990 overlap by 50 nucleotides
BPHYT_RS00975: BPHYT_RS00975 - arsenic transporter, at 223,682 to 224,743
_RS00975
BPHYT_RS00980: BPHYT_RS00980 - GCN5 family acetyltransferase, at 224,753 to 225,199
_RS00980
BPHYT_RS00985: BPHYT_RS00985 - NADPH-dependent FMN reductase, at 225,221 to 225,985
_RS00985
BPHYT_RS00990: BPHYT_RS00990 - MFS transporter, at 225,936 to 227,198
_RS00990
Position (kb) 224
225
226 Strain fitness (log2 ratio) -2
-1
0
1 at 224.063 kb on + strand, within BPHYT_RS00975 at 224.063 kb on + strand, within BPHYT_RS00975 at 224.254 kb on + strand, within BPHYT_RS00975 at 224.280 kb on - strand, within BPHYT_RS00975 at 224.280 kb on - strand, within BPHYT_RS00975 at 224.763 kb on + strand at 224.921 kb on + strand, within BPHYT_RS00980 at 225.218 kb on - strand at 225.329 kb on + strand, within BPHYT_RS00985 at 225.353 kb on + strand, within BPHYT_RS00985 at 225.354 kb on - strand, within BPHYT_RS00985 at 225.354 kb on - strand, within BPHYT_RS00985 at 225.399 kb on + strand, within BPHYT_RS00985 at 225.788 kb on + strand, within BPHYT_RS00985 at 225.788 kb on + strand, within BPHYT_RS00985 at 225.789 kb on - strand, within BPHYT_RS00985 at 225.821 kb on + strand, within BPHYT_RS00985 at 225.823 kb on + strand, within BPHYT_RS00985 at 225.824 kb on - strand, within BPHYT_RS00985 at 226.062 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto corn MOI 1 remove 224,063 + BPHYT_RS00975 0.36 -2.5 224,063 + BPHYT_RS00975 0.36 +1.6 224,254 + BPHYT_RS00975 0.54 +0.1 224,280 - BPHYT_RS00975 0.56 -0.2 224,280 - BPHYT_RS00975 0.56 -0.3 224,763 + -0.6 224,921 + BPHYT_RS00980 0.38 -1.8 225,218 - -0.9 225,329 + BPHYT_RS00985 0.14 +1.1 225,353 + BPHYT_RS00985 0.17 +0.3 225,354 - BPHYT_RS00985 0.17 +0.8 225,354 - BPHYT_RS00985 0.17 +0.8 225,399 + BPHYT_RS00985 0.23 +0.6 225,788 + BPHYT_RS00985 0.74 -0.4 225,788 + BPHYT_RS00985 0.74 -0.8 225,789 - BPHYT_RS00985 0.74 -0.0 225,821 + BPHYT_RS00985 0.78 +1.1 225,823 + BPHYT_RS00985 0.79 -0.4 225,824 - BPHYT_RS00985 0.79 -0.0 226,062 + -0.2
Or see this region's nucleotide sequence