Experiment: P. phyto PHYTO2 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06305 and BPHYT_RS06310 are separated by 298 nucleotides BPHYT_RS06310 and BPHYT_RS06315 are separated by 20 nucleotides BPHYT_RS06315 and BPHYT_RS06320 are separated by 75 nucleotides BPHYT_RS06320 and BPHYT_RS06325 are separated by 10 nucleotides
BPHYT_RS06305: BPHYT_RS06305 - small mechanosensitive ion channel protein MscS, at 1,436,798 to 1,437,607
_RS06305
BPHYT_RS06310: BPHYT_RS06310 - heme oxygenase, at 1,437,906 to 1,438,442
_RS06310
BPHYT_RS06315: BPHYT_RS06315 - histidine kinase, at 1,438,463 to 1,440,109
_RS06315
BPHYT_RS06320: BPHYT_RS06320 - chemotaxis protein CheY, at 1,440,185 to 1,440,622
_RS06320
BPHYT_RS06325: BPHYT_RS06325 - ATPase, at 1,440,633 to 1,443,008
_RS06325
Position (kb) 1438
1439
1440
1441 Strain fitness (log2 ratio) -1
0
1
2 at 1437.730 kb on - strand at 1438.161 kb on + strand, within BPHYT_RS06310 at 1438.179 kb on + strand, within BPHYT_RS06310 at 1438.218 kb on + strand, within BPHYT_RS06310 at 1438.218 kb on + strand, within BPHYT_RS06310 at 1438.462 kb on + strand at 1438.463 kb on - strand at 1438.463 kb on - strand at 1438.544 kb on + strand at 1438.545 kb on - strand at 1438.651 kb on + strand, within BPHYT_RS06315 at 1438.910 kb on + strand, within BPHYT_RS06315 at 1439.594 kb on - strand, within BPHYT_RS06315 at 1439.699 kb on - strand, within BPHYT_RS06315 at 1439.699 kb on - strand, within BPHYT_RS06315 at 1440.285 kb on + strand, within BPHYT_RS06320 at 1440.286 kb on - strand, within BPHYT_RS06320 at 1440.618 kb on - strand at 1440.757 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 0.1 remove 1,437,730 - -1.2 1,438,161 + BPHYT_RS06310 0.47 -0.1 1,438,179 + BPHYT_RS06310 0.51 +0.5 1,438,218 + BPHYT_RS06310 0.58 +1.1 1,438,218 + BPHYT_RS06310 0.58 +0.1 1,438,462 + -0.1 1,438,463 - +0.5 1,438,463 - +0.8 1,438,544 + +0.0 1,438,545 - +0.7 1,438,651 + BPHYT_RS06315 0.11 +0.1 1,438,910 + BPHYT_RS06315 0.27 -0.0 1,439,594 - BPHYT_RS06315 0.69 -0.0 1,439,699 - BPHYT_RS06315 0.75 +0.7 1,439,699 - BPHYT_RS06315 0.75 +0.6 1,440,285 + BPHYT_RS06320 0.23 +0.3 1,440,286 - BPHYT_RS06320 0.23 +0.5 1,440,618 - +1.9 1,440,757 - -0.5
Or see this region's nucleotide sequence