Experiment: P. phyto PHYTO2 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02490 and BPHYT_RS02495 are separated by 144 nucleotides BPHYT_RS02495 and BPHYT_RS02500 overlap by 4 nucleotides BPHYT_RS02500 and BPHYT_RS02505 are separated by 85 nucleotides
BPHYT_RS02490: BPHYT_RS02490 - iron ABC transporter substrate-binding protein, at 564,570 to 565,685
_RS02490
BPHYT_RS02495: BPHYT_RS02495 - ABC transporter, at 565,830 to 566,768
_RS02495
BPHYT_RS02500: BPHYT_RS02500 - spermidine/putrescine ABC transporter permease, at 566,765 to 567,556
_RS02500
BPHYT_RS02505: BPHYT_RS02505 - spermidine/putrescine ABC transporter ATPase, at 567,642 to 568,712
_RS02505
Position (kb) 565
566
567 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 564.932 kb on + strand, within BPHYT_RS02490 at 564.933 kb on + strand at 565.006 kb on - strand, within BPHYT_RS02490 at 565.149 kb on + strand, within BPHYT_RS02490 at 565.459 kb on - strand, within BPHYT_RS02490 at 565.500 kb on + strand, within BPHYT_RS02490 at 565.500 kb on + strand, within BPHYT_RS02490 at 565.519 kb on - strand, within BPHYT_RS02490 at 565.697 kb on + strand at 565.698 kb on - strand at 565.743 kb on - strand at 565.964 kb on + strand, within BPHYT_RS02495 at 566.313 kb on + strand, within BPHYT_RS02495 at 566.379 kb on + strand, within BPHYT_RS02495 at 566.380 kb on - strand, within BPHYT_RS02495 at 566.380 kb on - strand, within BPHYT_RS02495 at 566.385 kb on + strand, within BPHYT_RS02495 at 566.484 kb on + strand, within BPHYT_RS02495 at 566.491 kb on - strand, within BPHYT_RS02495 at 566.587 kb on - strand, within BPHYT_RS02495 at 566.613 kb on - strand, within BPHYT_RS02495 at 566.880 kb on - strand, within BPHYT_RS02500 at 566.880 kb on - strand, within BPHYT_RS02500 at 567.110 kb on + strand, within BPHYT_RS02500 at 567.110 kb on + strand, within BPHYT_RS02500 at 567.110 kb on + strand, within BPHYT_RS02500 at 567.111 kb on - strand, within BPHYT_RS02500 at 567.111 kb on - strand, within BPHYT_RS02500 at 567.113 kb on - strand, within BPHYT_RS02500 at 567.171 kb on + strand, within BPHYT_RS02500 at 567.179 kb on + strand, within BPHYT_RS02500 at 567.200 kb on + strand, within BPHYT_RS02500 at 567.201 kb on - strand, within BPHYT_RS02500 at 567.517 kb on - strand at 567.671 kb on + strand at 567.672 kb on - strand at 567.672 kb on - strand at 567.672 kb on - strand at 567.672 kb on - strand at 567.672 kb on - strand at 567.737 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 0.1 remove 564,932 + BPHYT_RS02490 0.32 -0.4 564,933 + +2.4 565,006 - BPHYT_RS02490 0.39 -2.5 565,149 + BPHYT_RS02490 0.52 -0.6 565,459 - BPHYT_RS02490 0.80 -0.0 565,500 + BPHYT_RS02490 0.83 -2.2 565,500 + BPHYT_RS02490 0.83 +0.2 565,519 - BPHYT_RS02490 0.85 -1.2 565,697 + -0.2 565,698 - +0.9 565,743 - +1.0 565,964 + BPHYT_RS02495 0.14 -1.1 566,313 + BPHYT_RS02495 0.51 -1.3 566,379 + BPHYT_RS02495 0.58 -1.2 566,380 - BPHYT_RS02495 0.59 +0.3 566,380 - BPHYT_RS02495 0.59 +1.0 566,385 + BPHYT_RS02495 0.59 -1.0 566,484 + BPHYT_RS02495 0.70 -0.3 566,491 - BPHYT_RS02495 0.70 -0.7 566,587 - BPHYT_RS02495 0.81 -0.6 566,613 - BPHYT_RS02495 0.83 +0.4 566,880 - BPHYT_RS02500 0.15 -0.1 566,880 - BPHYT_RS02500 0.15 -0.1 567,110 + BPHYT_RS02500 0.44 -1.8 567,110 + BPHYT_RS02500 0.44 +2.2 567,110 + BPHYT_RS02500 0.44 -0.2 567,111 - BPHYT_RS02500 0.44 -0.0 567,111 - BPHYT_RS02500 0.44 +3.0 567,113 - BPHYT_RS02500 0.44 +1.9 567,171 + BPHYT_RS02500 0.51 -0.6 567,179 + BPHYT_RS02500 0.52 -0.3 567,200 + BPHYT_RS02500 0.55 -0.7 567,201 - BPHYT_RS02500 0.55 +0.3 567,517 - -0.4 567,671 + +0.0 567,672 - +0.6 567,672 - -0.6 567,672 - -0.4 567,672 - +0.3 567,672 - -0.6 567,737 + +0.5
Or see this region's nucleotide sequence