Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36395 and BPHYT_RS36400 are separated by 683 nucleotides BPHYT_RS36400 and BPHYT_RS36405 overlap by 4 nucleotides
BPHYT_RS36395: BPHYT_RS36395 - hypothetical protein, at 91,609 to 91,920
_RS36395
BPHYT_RS36400: BPHYT_RS36400 - hypothetical protein, at 92,604 to 93,197
_RS36400
BPHYT_RS36405: BPHYT_RS36405 - hypothetical protein, at 93,194 to 94,993
_RS36405
Position (kb) 92
93
94 Strain fitness (log2 ratio) -2
-1
0
1 at 91.650 kb on + strand, within BPHYT_RS36395 at 91.651 kb on - strand, within BPHYT_RS36395 at 91.985 kb on - strand at 91.985 kb on - strand at 92.180 kb on + strand at 92.185 kb on - strand at 92.185 kb on - strand at 92.190 kb on + strand at 92.630 kb on - strand at 92.925 kb on - strand, within BPHYT_RS36400 at 93.307 kb on + strand at 93.330 kb on + strand at 93.347 kb on + strand at 93.393 kb on + strand, within BPHYT_RS36405 at 93.394 kb on - strand, within BPHYT_RS36405 at 93.400 kb on - strand, within BPHYT_RS36405 at 93.563 kb on + strand, within BPHYT_RS36405 at 93.563 kb on + strand, within BPHYT_RS36405 at 93.564 kb on - strand, within BPHYT_RS36405 at 93.564 kb on - strand, within BPHYT_RS36405 at 93.686 kb on + strand, within BPHYT_RS36405 at 93.687 kb on - strand, within BPHYT_RS36405 at 93.804 kb on - strand, within BPHYT_RS36405 at 93.846 kb on - strand, within BPHYT_RS36405 at 93.846 kb on - strand, within BPHYT_RS36405 at 93.968 kb on + strand, within BPHYT_RS36405 at 93.968 kb on + strand, within BPHYT_RS36405 at 93.969 kb on - strand, within BPHYT_RS36405 at 94.063 kb on - strand, within BPHYT_RS36405
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 91,650 + BPHYT_RS36395 0.13 +1.6 91,651 - BPHYT_RS36395 0.13 -0.4 91,985 - +0.8 91,985 - -0.6 92,180 + -1.6 92,185 - +1.2 92,185 - +0.6 92,190 + -0.7 92,630 - -1.3 92,925 - BPHYT_RS36400 0.54 -2.1 93,307 + -0.1 93,330 + +0.2 93,347 + -0.3 93,393 + BPHYT_RS36405 0.11 +0.5 93,394 - BPHYT_RS36405 0.11 -0.2 93,400 - BPHYT_RS36405 0.11 +1.3 93,563 + BPHYT_RS36405 0.20 +1.6 93,563 + BPHYT_RS36405 0.20 -0.2 93,564 - BPHYT_RS36405 0.21 -1.0 93,564 - BPHYT_RS36405 0.21 -0.9 93,686 + BPHYT_RS36405 0.27 -2.2 93,687 - BPHYT_RS36405 0.27 +0.3 93,804 - BPHYT_RS36405 0.34 -1.3 93,846 - BPHYT_RS36405 0.36 -0.2 93,846 - BPHYT_RS36405 0.36 +1.5 93,968 + BPHYT_RS36405 0.43 -1.2 93,968 + BPHYT_RS36405 0.43 +1.6 93,969 - BPHYT_RS36405 0.43 -1.2 94,063 - BPHYT_RS36405 0.48 +0.4
Or see this region's nucleotide sequence