Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36265 and BPHYT_RS36270 are separated by 3 nucleotides BPHYT_RS36270 and BPHYT_RS36275 are separated by 386 nucleotides BPHYT_RS36275 and BPHYT_RS36280 are separated by 1 nucleotides
BPHYT_RS36265: BPHYT_RS36265 - hypothetical protein, at 63,406 to 63,843
_RS36265
BPHYT_RS36270: BPHYT_RS36270 - hypothetical protein, at 63,847 to 64,425
_RS36270
BPHYT_RS36275: BPHYT_RS36275 - hypothetical protein, at 64,812 to 65,195
_RS36275
BPHYT_RS36280: BPHYT_RS36280 - type IV secretion system protein VirD4, at 65,197 to 66,885
_RS36280
Position (kb) 64
65
66 Strain fitness (log2 ratio) -2
-1
0
1
2 at 64.588 kb on + strand at 64.823 kb on - strand at 64.931 kb on - strand, within BPHYT_RS36275 at 65.107 kb on - strand, within BPHYT_RS36275 at 65.107 kb on - strand, within BPHYT_RS36275 at 65.196 kb on + strand at 65.224 kb on + strand at 65.224 kb on + strand at 65.224 kb on + strand at 65.224 kb on + strand at 65.224 kb on + strand at 65.225 kb on - strand at 65.294 kb on + strand at 65.366 kb on + strand, within BPHYT_RS36280 at 65.367 kb on - strand, within BPHYT_RS36280 at 65.419 kb on - strand, within BPHYT_RS36280 at 65.458 kb on + strand at 65.532 kb on + strand, within BPHYT_RS36280 at 65.532 kb on + strand, within BPHYT_RS36280 at 65.532 kb on + strand, within BPHYT_RS36280 at 65.641 kb on - strand, within BPHYT_RS36280 at 65.802 kb on - strand, within BPHYT_RS36280 at 65.891 kb on + strand, within BPHYT_RS36280 at 65.972 kb on + strand at 66.006 kb on + strand, within BPHYT_RS36280 at 66.036 kb on + strand, within BPHYT_RS36280 at 66.061 kb on + strand, within BPHYT_RS36280 at 66.061 kb on + strand, within BPHYT_RS36280 at 66.062 kb on - strand, within BPHYT_RS36280 at 66.062 kb on - strand, within BPHYT_RS36280 at 66.062 kb on - strand, within BPHYT_RS36280 at 66.063 kb on + strand, within BPHYT_RS36280 at 66.079 kb on + strand, within BPHYT_RS36280 at 66.080 kb on - strand, within BPHYT_RS36280 at 66.110 kb on - strand, within BPHYT_RS36280
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 64,588 + +1.6 64,823 - +0.6 64,931 - BPHYT_RS36275 0.31 -1.0 65,107 - BPHYT_RS36275 0.77 -0.4 65,107 - BPHYT_RS36275 0.77 -1.2 65,196 + +1.0 65,224 + -0.8 65,224 + -1.2 65,224 + +1.6 65,224 + +0.1 65,224 + +0.0 65,225 - +2.6 65,294 + +1.0 65,366 + BPHYT_RS36280 0.10 +0.6 65,367 - BPHYT_RS36280 0.10 -2.0 65,419 - BPHYT_RS36280 0.13 +0.0 65,458 + +0.6 65,532 + BPHYT_RS36280 0.20 +0.9 65,532 + BPHYT_RS36280 0.20 +0.1 65,532 + BPHYT_RS36280 0.20 -0.4 65,641 - BPHYT_RS36280 0.26 -0.4 65,802 - BPHYT_RS36280 0.36 -2.7 65,891 + BPHYT_RS36280 0.41 -0.4 65,972 + +0.6 66,006 + BPHYT_RS36280 0.48 +0.6 66,036 + BPHYT_RS36280 0.50 -0.3 66,061 + BPHYT_RS36280 0.51 +0.4 66,061 + BPHYT_RS36280 0.51 -0.9 66,062 - BPHYT_RS36280 0.51 -2.0 66,062 - BPHYT_RS36280 0.51 +1.6 66,062 - BPHYT_RS36280 0.51 -0.3 66,063 + BPHYT_RS36280 0.51 +2.3 66,079 + BPHYT_RS36280 0.52 -0.7 66,080 - BPHYT_RS36280 0.52 +0.6 66,110 - BPHYT_RS36280 0.54 +0.3
Or see this region's nucleotide sequence