Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36185

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS36175 and BPHYT_RS36180 are separated by 97 nucleotidesBPHYT_RS36180 and BPHYT_RS36185 are separated by 241 nucleotidesBPHYT_RS36185 and BPHYT_RS36190 are separated by 743 nucleotides BPHYT_RS36175: BPHYT_RS36175 - hypothetical protein, at 50,461 to 50,697 _RS36175 BPHYT_RS36180: BPHYT_RS36180 - hypothetical protein, at 50,795 to 51,109 _RS36180 BPHYT_RS36185: BPHYT_RS36185 - hypothetical protein, at 51,351 to 51,665 _RS36185 BPHYT_RS36190: BPHYT_RS36190 - hypothetical protein, at 52,409 to 52,753 _RS36190 Position (kb) 51 52Strain fitness (log2 ratio) -3 -2 -1 0 1at 50.560 kb on - strand, within BPHYT_RS36175at 50.615 kb on - strand, within BPHYT_RS36175at 50.703 kb on - strandat 50.793 kb on + strandat 50.852 kb on + strand, within BPHYT_RS36180at 50.853 kb on - strand, within BPHYT_RS36180at 50.853 kb on - strand, within BPHYT_RS36180at 50.853 kb on - strand, within BPHYT_RS36180at 50.932 kb on + strand, within BPHYT_RS36180at 51.114 kb on - strandat 51.125 kb on + strandat 51.330 kb on + strandat 51.330 kb on + strandat 51.435 kb on + strand, within BPHYT_RS36185at 51.435 kb on + strand, within BPHYT_RS36185at 51.661 kb on - strandat 51.661 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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50,560 - BPHYT_RS36175 0.42 -3.1
50,615 - BPHYT_RS36175 0.65 +1.3
50,703 - -0.6
50,793 + -1.3
50,852 + BPHYT_RS36180 0.18 -0.5
50,853 - BPHYT_RS36180 0.18 -0.1
50,853 - BPHYT_RS36180 0.18 -1.8
50,853 - BPHYT_RS36180 0.18 -0.4
50,932 + BPHYT_RS36180 0.43 -2.5
51,114 - -0.5
51,125 + -0.7
51,330 + -1.6
51,330 + +0.0
51,435 + BPHYT_RS36185 0.27 -1.0
51,435 + BPHYT_RS36185 0.27 -1.4
51,661 - -0.4
51,661 - +0.6

Or see this region's nucleotide sequence