Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36175 and BPHYT_RS36180 are separated by 97 nucleotides BPHYT_RS36180 and BPHYT_RS36185 are separated by 241 nucleotides BPHYT_RS36185 and BPHYT_RS36190 are separated by 743 nucleotides
BPHYT_RS36175: BPHYT_RS36175 - hypothetical protein, at 50,461 to 50,697
_RS36175
BPHYT_RS36180: BPHYT_RS36180 - hypothetical protein, at 50,795 to 51,109
_RS36180
BPHYT_RS36185: BPHYT_RS36185 - hypothetical protein, at 51,351 to 51,665
_RS36185
BPHYT_RS36190: BPHYT_RS36190 - hypothetical protein, at 52,409 to 52,753
_RS36190
Position (kb) 51
52 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 50.560 kb on - strand, within BPHYT_RS36175 at 50.615 kb on - strand, within BPHYT_RS36175 at 50.703 kb on - strand at 50.793 kb on + strand at 50.852 kb on + strand, within BPHYT_RS36180 at 50.853 kb on - strand, within BPHYT_RS36180 at 50.853 kb on - strand, within BPHYT_RS36180 at 50.853 kb on - strand, within BPHYT_RS36180 at 50.932 kb on + strand, within BPHYT_RS36180 at 51.114 kb on - strand at 51.125 kb on + strand at 51.330 kb on + strand at 51.330 kb on + strand at 51.435 kb on + strand, within BPHYT_RS36185 at 51.435 kb on + strand, within BPHYT_RS36185 at 51.661 kb on - strand at 51.661 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 50,560 - BPHYT_RS36175 0.42 -3.1 50,615 - BPHYT_RS36175 0.65 +1.3 50,703 - -0.6 50,793 + -1.3 50,852 + BPHYT_RS36180 0.18 -0.5 50,853 - BPHYT_RS36180 0.18 -0.1 50,853 - BPHYT_RS36180 0.18 -1.8 50,853 - BPHYT_RS36180 0.18 -0.4 50,932 + BPHYT_RS36180 0.43 -2.5 51,114 - -0.5 51,125 + -0.7 51,330 + -1.6 51,330 + +0.0 51,435 + BPHYT_RS36185 0.27 -1.0 51,435 + BPHYT_RS36185 0.27 -1.4 51,661 - -0.4 51,661 - +0.6
Or see this region's nucleotide sequence