Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36185
Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | P. phyto PHYTO2 MOI 1 |
---|---|---|---|---|---|
remove | |||||
50,560 | - | BPHYT_RS36175 | 0.42 | -3.1 | |
50,615 | - | BPHYT_RS36175 | 0.65 | +1.3 | |
50,703 | - | -0.6 | |||
50,793 | + | -1.3 | |||
50,852 | + | BPHYT_RS36180 | 0.18 | -0.5 | |
50,853 | - | BPHYT_RS36180 | 0.18 | -0.1 | |
50,853 | - | BPHYT_RS36180 | 0.18 | -1.8 | |
50,853 | - | BPHYT_RS36180 | 0.18 | -0.4 | |
50,932 | + | BPHYT_RS36180 | 0.43 | -2.5 | |
51,114 | - | -0.5 | |||
51,125 | + | -0.7 | |||
51,330 | + | -1.6 | |||
51,330 | + | +0.0 | |||
51,435 | + | BPHYT_RS36185 | 0.27 | -1.0 | |
51,435 | + | BPHYT_RS36185 | 0.27 | -1.4 | |
51,661 | - | -0.4 | |||
51,661 | - | +0.6 |
Or see this region's nucleotide sequence