Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36090

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS36080 and BPHYT_RS36085 overlap by 4 nucleotidesBPHYT_RS36085 and BPHYT_RS36090 are separated by 428 nucleotidesBPHYT_RS36090 and BPHYT_RS36095 are separated by 19 nucleotidesBPHYT_RS36095 and BPHYT_RS36100 are separated by 128 nucleotidesBPHYT_RS36100 and BPHYT_RS36105 are separated by 54 nucleotides BPHYT_RS36080: BPHYT_RS36080 - hypothetical protein, at 40,568 to 40,915 _RS36080 BPHYT_RS36085: BPHYT_RS36085 - hypothetical protein, at 40,912 to 41,403 _RS36085 BPHYT_RS36090: BPHYT_RS36090 - hypothetical protein, at 41,832 to 42,038 _RS36090 BPHYT_RS36095: BPHYT_RS36095 - hypothetical protein, at 42,058 to 42,282 _RS36095 BPHYT_RS36100: BPHYT_RS36100 - hypothetical protein, at 42,411 to 42,680 _RS36100 BPHYT_RS36105: BPHYT_RS36105 - hypothetical protein, at 42,735 to 43,067 _RS36105 Position (kb) 41 42 43Strain fitness (log2 ratio) -2 -1 0 1at 40.887 kb on + strandat 41.292 kb on - strand, within BPHYT_RS36085at 41.814 kb on - strandat 41.861 kb on + strand, within BPHYT_RS36090at 41.861 kb on + strand, within BPHYT_RS36090at 41.862 kb on - strand, within BPHYT_RS36090at 42.371 kb on - strandat 42.504 kb on + strand, within BPHYT_RS36100at 42.658 kb on - strandat 42.866 kb on - strand, within BPHYT_RS36105

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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40,887 + -0.3
41,292 - BPHYT_RS36085 0.77 +0.2
41,814 - -2.7
41,861 + BPHYT_RS36090 0.14 -2.5
41,861 + BPHYT_RS36090 0.14 -1.8
41,862 - BPHYT_RS36090 0.14 -1.6
42,371 - +0.6
42,504 + BPHYT_RS36100 0.34 +0.6
42,658 - -0.8
42,866 - BPHYT_RS36105 0.39 +0.6

Or see this region's nucleotide sequence