Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35355
Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | P. phyto PHYTO2 MOI 1 |
---|---|---|---|---|---|
remove | |||||
3,530,536 | - | BPHYT_RS35350 | 0.69 | -1.4 | |
3,530,599 | - | BPHYT_RS35350 | 0.76 | -2.1 | |
3,530,709 | + | BPHYT_RS35350 | 0.88 | +0.1 | |
3,530,709 | + | BPHYT_RS35350 | 0.88 | -3.2 | |
3,530,709 | + | BPHYT_RS35350 | 0.88 | +0.6 | |
3,531,150 | - | BPHYT_RS35355 | 0.35 | -0.8 | |
3,531,194 | + | BPHYT_RS35355 | 0.39 | +1.7 | |
3,531,384 | - | BPHYT_RS35355 | 0.59 | -0.7 | |
3,531,404 | - | BPHYT_RS35355 | 0.61 | -0.1 | |
3,531,438 | - | BPHYT_RS35355 | 0.65 | +0.3 | |
3,531,540 | - | BPHYT_RS35355 | 0.75 | -0.4 | |
3,531,540 | - | -0.0 | |||
3,531,595 | - | BPHYT_RS35355 | 0.81 | +0.2 | |
3,531,666 | - | BPHYT_RS35355 | 0.89 | +2.2 | |
3,531,964 | + | -1.3 | |||
3,531,977 | + | +2.3 | |||
3,532,004 | + | +0.5 | |||
3,532,694 | - | BPHYT_RS35360 | 0.76 | +0.9 |
Or see this region's nucleotide sequence