Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33355
Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | P. phyto PHYTO2 MOI 1 |
---|---|---|---|---|---|
remove | |||||
3,065,359 | + | BPHYT_RS33350 | 0.52 | +1.1 | |
3,065,523 | + | BPHYT_RS33350 | 0.64 | -0.2 | |
3,065,524 | - | BPHYT_RS33350 | 0.64 | -2.2 | |
3,065,737 | + | BPHYT_RS33350 | 0.80 | -0.0 | |
3,065,765 | - | BPHYT_RS33350 | 0.82 | -0.7 | |
3,066,454 | + | BPHYT_RS33355 | 0.22 | -2.1 | |
3,066,490 | + | BPHYT_RS33355 | 0.24 | -1.6 | |
3,067,538 | + | BPHYT_RS33355 | 0.85 | +0.1 | |
3,067,539 | - | BPHYT_RS33355 | 0.85 | -0.3 | |
3,068,228 | - | BPHYT_RS33360 | 0.32 | +0.7 | |
3,068,519 | - | BPHYT_RS33360 | 0.55 | +0.2 | |
3,068,630 | - | BPHYT_RS33360 | 0.64 | +0.4 |
Or see this region's nucleotide sequence