Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32640

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
2,896,920	+		BPHYT_RS32635	0.71	+0.8
2,896,920	+		BPHYT_RS32635	0.71	-0.5
2,896,921	-		BPHYT_RS32635	0.71	+0.1
2,897,193	+		BPHYT_RS32635	0.86	-0.3
2,897,194	-		BPHYT_RS32635	0.86	-1.2
2,897,194	-		BPHYT_RS32635	0.86	-1.2
2,897,246	+		BPHYT_RS32635	0.89	+0.3
2,897,247	-		BPHYT_RS32635	0.89	+1.1
2,897,542	+				-0.2
2,897,564	+				-2.6
2,897,568	+				-0.4
2,897,637	-				+1.5
2,897,694	+				+0.0
2,897,694	+				+0.4
2,897,694	+				-0.7
2,897,695	-				-0.8
2,897,782	+				-0.4
2,897,867	+				+0.5
2,898,007	+				-0.5
2,898,007	+				-0.1
2,898,048	-		BPHYT_RS32640	0.13	-1.3
2,898,062	-		BPHYT_RS32640	0.14	+0.0
2,898,190	+		BPHYT_RS32640	0.24	+0.5
2,898,279	+		BPHYT_RS32640	0.32	-0.1
2,898,279	+		BPHYT_RS32640	0.32	+0.7
2,898,590	-		BPHYT_RS32640	0.58	-0.6
2,898,590	-		BPHYT_RS32640	0.58	-1.7
2,898,907	+		BPHYT_RS32640	0.84	-1.0
2,898,907	+		BPHYT_RS32640	0.84	+1.4
2,899,030	+				-2.2
2,899,030	+				-0.1
2,899,030	+				+1.1
2,899,030	+				-0.8
2,899,030	+				-1.2
2,899,166	+				+0.2
2,899,170	+				-0.2
2,899,170	+				-0.3
2,899,170	+				+0.6
2,899,177	+				-0.3
2,899,181	+				-0.5
2,899,182	-				-1.5
2,899,182	-				+0.2
2,899,292	+				-0.2
2,899,293	-				+1.8
2,899,293	-				+0.1
2,899,438	+		BPHYT_RS32645	0.19	-0.1
2,899,439	-		BPHYT_RS32645	0.19	+0.3
2,899,444	+		BPHYT_RS32645	0.20	+0.1
2,899,444	+		BPHYT_RS32645	0.20	-0.6
2,899,444	+		BPHYT_RS32645	0.20	-0.2
2,899,445	-		BPHYT_RS32645	0.20	+0.6
2,899,682	+		BPHYT_RS32645	0.40	-0.0
2,899,792	+		BPHYT_RS32645	0.49	-1.0
2,899,793	-		BPHYT_RS32645	0.49	+1.1
2,899,793	-		BPHYT_RS32645	0.49	-0.4
2,899,793	-		BPHYT_RS32645	0.49	+0.6
2,899,870	+		BPHYT_RS32645	0.56	+0.4
2,899,871	-		BPHYT_RS32645	0.56	-1.2
2,899,922	-		BPHYT_RS32645	0.60	-1.4
2,899,954	+		BPHYT_RS32645	0.63	-2.5
2,900,031	-		BPHYT_RS32645	0.70	-0.3