Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32255
Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | P. phyto PHYTO2 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,806,705 | + | -2.8 | |||
2,806,706 | - | +0.7 | |||
2,806,956 | + | -0.8 | |||
2,807,009 | - | +1.7 | |||
2,807,017 | - | -0.6 | |||
2,807,524 | + | BPHYT_RS32260 | 0.15 | -1.8 | |
2,807,873 | - | +0.7 | |||
2,807,876 | + | -2.1 | |||
2,808,054 | - | BPHYT_RS32265 | 0.17 | -0.6 | |
2,808,086 | + | BPHYT_RS32265 | 0.19 | -0.1 | |
2,808,087 | - | BPHYT_RS32265 | 0.19 | -1.7 | |
2,808,199 | - | BPHYT_RS32265 | 0.27 | -0.2 | |
2,808,365 | + | BPHYT_RS32265 | 0.37 | -1.8 |
Or see this region's nucleotide sequence