Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31415

Experiment: P. phyto PHYTO2 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS31410 and BPHYT_RS31415 are separated by 23 nucleotidesBPHYT_RS31415 and BPHYT_RS31420 are separated by 54 nucleotidesBPHYT_RS31420 and BPHYT_RS31425 are separated by 33 nucleotides BPHYT_RS31410: BPHYT_RS31410 - D-amino acid oxidase, at 2,601,630 to 2,602,970 _RS31410 BPHYT_RS31415: BPHYT_RS31415 - amino acid ABC transporter permease, at 2,602,994 to 2,603,791 _RS31415 BPHYT_RS31420: BPHYT_RS31420 - ABC transporter substrate-binding protein, at 2,603,846 to 2,604,658 _RS31420 BPHYT_RS31425: BPHYT_RS31425 - arginine ABC transporter ATP-binding protein, at 2,604,692 to 2,605,393 _RS31425 Position (kb) 2602 2603 2604Strain fitness (log2 ratio) -3 -2 -1 0 1at 2602.660 kb on - strand, within BPHYT_RS31410at 2602.663 kb on + strand, within BPHYT_RS31410at 2602.881 kb on + strandat 2603.272 kb on - strand, within BPHYT_RS31415at 2604.181 kb on - strand, within BPHYT_RS31420at 2604.650 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
remove
2,602,660 - BPHYT_RS31410 0.77 -0.9
2,602,663 + BPHYT_RS31410 0.77 +0.0
2,602,881 + -2.2
2,603,272 - BPHYT_RS31415 0.35 -3.6
2,604,181 - BPHYT_RS31420 0.41 +0.7
2,604,650 + -1.0

Or see this region's nucleotide sequence