Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30680
Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | P. phyto PHYTO2 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,439,782 | - | BPHYT_RS30675 | 0.79 | -1.4 | |
2,439,782 | - | BPHYT_RS30675 | 0.79 | +0.2 | |
2,439,789 | + | BPHYT_RS30675 | 0.80 | +0.9 | |
2,439,789 | + | BPHYT_RS30675 | 0.80 | +0.6 | |
2,439,790 | - | BPHYT_RS30675 | 0.80 | -0.3 | |
2,439,790 | - | BPHYT_RS30675 | 0.80 | -1.8 | |
2,440,108 | - | -1.5 | |||
2,440,108 | - | +0.1 | |||
2,440,521 | - | BPHYT_RS30680 | 0.13 | -0.9 | |
2,440,921 | + | BPHYT_RS30680 | 0.41 | -0.5 | |
2,440,922 | - | BPHYT_RS30680 | 0.41 | -0.4 | |
2,441,189 | + | BPHYT_RS30680 | 0.60 | -0.2 | |
2,441,190 | - | BPHYT_RS30680 | 0.60 | -0.3 | |
2,441,588 | + | BPHYT_RS30680 | 0.88 | +1.0 | |
2,441,589 | - | BPHYT_RS30680 | 0.88 | -1.9 | |
2,441,630 | + | -0.5 | |||
2,441,682 | - | -3.3 | |||
2,441,791 | + | -1.5 | |||
2,441,791 | + | +0.8 | |||
2,441,865 | - | -0.5 | |||
2,442,299 | + | BPHYT_RS30685 | 0.50 | -1.7 | |
2,442,558 | - | BPHYT_RS30685 | 0.75 | +0.1 | |
2,442,664 | - | BPHYT_RS30685 | 0.86 | +0.4 | |
2,442,674 | - | BPHYT_RS30685 | 0.87 | +0.6 | |
2,442,749 | + | -0.1 |
Or see this region's nucleotide sequence