Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30515

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30510 and BPHYT_RS30515 are separated by 99 nucleotidesBPHYT_RS30515 and BPHYT_RS30520 are separated by 120 nucleotides BPHYT_RS30510: BPHYT_RS30510 - aldehyde dehydrogenase, at 2,403,993 to 2,405,420 _RS30510 BPHYT_RS30515: BPHYT_RS30515 - sorbose dehydrogenase, at 2,405,520 to 2,407,199 _RS30515 BPHYT_RS30520: BPHYT_RS30520 - ABC transporter substrate-binding protein, at 2,407,320 to 2,408,366 _RS30520 Position (kb) 2405 2406 2407 2408Strain fitness (log2 ratio) -3 -2 -1 0 1at 2404.546 kb on + strand, within BPHYT_RS30510at 2405.070 kb on + strand, within BPHYT_RS30510at 2405.924 kb on - strand, within BPHYT_RS30515at 2406.261 kb on + strand, within BPHYT_RS30515at 2406.835 kb on + strand, within BPHYT_RS30515at 2407.501 kb on + strand, within BPHYT_RS30520at 2407.502 kb on - strand, within BPHYT_RS30520at 2407.975 kb on + strand, within BPHYT_RS30520

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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2,404,546 + BPHYT_RS30510 0.39 +0.2
2,405,070 + BPHYT_RS30510 0.75 +0.7
2,405,924 - BPHYT_RS30515 0.24 -0.6
2,406,261 + BPHYT_RS30515 0.44 -2.8
2,406,835 + BPHYT_RS30515 0.78 -3.0
2,407,501 + BPHYT_RS30520 0.17 -0.4
2,407,502 - BPHYT_RS30520 0.17 -0.0
2,407,975 + BPHYT_RS30520 0.63 +0.1

Or see this region's nucleotide sequence