Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29215

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
2,110,169	+				+1.1
2,110,170	-				+0.1
2,110,170	-				+0.4
2,110,170	-				+0.4
2,110,617	-				-1.0
2,111,176	+		BPHYT_RS29215	0.45	+0.9
2,111,177	-		BPHYT_RS29215	0.45	+1.9
2,111,521	+		BPHYT_RS29215	0.75	-0.1
2,111,540	-		BPHYT_RS29215	0.76	+2.1
2,111,540	-		BPHYT_RS29215	0.76	+0.3
2,111,547	+		BPHYT_RS29215	0.77	+0.5
2,111,556	+		BPHYT_RS29215	0.78	+1.1
2,111,707	+				-1.2
2,111,732	-				+1.3
2,111,732	-				+1.0
2,111,742	+				-0.2
2,112,160	+		BPHYT_RS29220	0.35	+1.6
2,112,207	-		BPHYT_RS29220	0.41	+0.6
2,112,208	+		BPHYT_RS29220	0.41	+0.3
2,112,252	-		BPHYT_RS29220	0.47	-0.7
2,112,458	-		BPHYT_RS29220	0.75	+1.3
2,112,560	-		BPHYT_RS29220	0.89	-1.3
2,112,578	-				+1.2
2,112,772	-				-0.6