Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29100

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29090 and BPHYT_RS29095 are separated by 71 nucleotidesBPHYT_RS29095 and BPHYT_RS29100 are separated by 191 nucleotidesBPHYT_RS29100 and BPHYT_RS29105 are separated by 15 nucleotides BPHYT_RS29090: BPHYT_RS29090 - oxidoreductase, at 2,080,883 to 2,081,617 _RS29090 BPHYT_RS29095: BPHYT_RS29095 - coenzyme F420-dependent NADP oxidoreductase, at 2,081,689 to 2,082,288 _RS29095 BPHYT_RS29100: BPHYT_RS29100 - ketosteroid isomerase, at 2,082,480 to 2,082,896 _RS29100 BPHYT_RS29105: BPHYT_RS29105 - class V aminotransferase, at 2,082,912 to 2,084,039 _RS29105 Position (kb) 2082 2083Strain fitness (log2 ratio) -3 -2 -1 0 1at 2081.703 kb on + strandat 2081.704 kb on - strandat 2082.096 kb on - strand, within BPHYT_RS29095at 2082.837 kb on + strand, within BPHYT_RS29100at 2082.913 kb on + strandat 2083.234 kb on + strand, within BPHYT_RS29105at 2083.691 kb on - strand, within BPHYT_RS29105

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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2,081,703 + -0.5
2,081,704 - -2.3
2,082,096 - BPHYT_RS29095 0.68 +0.3
2,082,837 + BPHYT_RS29100 0.86 -2.8
2,082,913 + +0.4
2,083,234 + BPHYT_RS29105 0.29 -1.6
2,083,691 - BPHYT_RS29105 0.69 -0.3

Or see this region's nucleotide sequence