Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28575

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28570 and BPHYT_RS28575 are separated by 293 nucleotidesBPHYT_RS28575 and BPHYT_RS28580 are separated by 165 nucleotides BPHYT_RS28570: BPHYT_RS28570 - urea ABC transporter substrate-binding protein, at 1,964,405 to 1,965,640 _RS28570 BPHYT_RS28575: BPHYT_RS28575 - transcriptional regulator, at 1,965,934 to 1,966,380 _RS28575 BPHYT_RS28580: BPHYT_RS28580 - 3-beta hydroxysteroid dehydrogenase, at 1,966,546 to 1,967,517 _RS28580 Position (kb) 1965 1966 1967Strain fitness (log2 ratio) -2 -1 0 1at 1966.131 kb on - strand, within BPHYT_RS28575at 1966.385 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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1,966,131 - BPHYT_RS28575 0.44 -2.4
1,966,385 - -0.5

Or see this region's nucleotide sequence