Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28245

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28240 and BPHYT_RS28245 are separated by 36 nucleotidesBPHYT_RS28245 and BPHYT_RS28250 are separated by 97 nucleotides BPHYT_RS28240: BPHYT_RS28240 - L-rhamnonate dehydratase, at 1,892,939 to 1,894,117 _RS28240 BPHYT_RS28245: BPHYT_RS28245 - MFS transporter, at 1,894,154 to 1,895,482 _RS28245 BPHYT_RS28250: BPHYT_RS28250 - 3-oxoacyl-ACP reductase, at 1,895,580 to 1,896,332 _RS28250 Position (kb) 1894 1895 1896Strain fitness (log2 ratio) -1 0 1at 1893.367 kb on - strand, within BPHYT_RS28240at 1893.678 kb on - strand, within BPHYT_RS28240at 1893.749 kb on - strand, within BPHYT_RS28240at 1894.173 kb on - strandat 1894.227 kb on - strandat 1894.584 kb on + strand, within BPHYT_RS28245at 1895.569 kb on - strandat 1896.440 kb on + strandat 1896.440 kb on + strandat 1896.441 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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1,893,367 - BPHYT_RS28240 0.36 -1.5
1,893,678 - BPHYT_RS28240 0.63 +0.5
1,893,749 - BPHYT_RS28240 0.69 -1.3
1,894,173 - +0.1
1,894,227 - +0.5
1,894,584 + BPHYT_RS28245 0.32 +0.8
1,895,569 - -0.2
1,896,440 + +0.5
1,896,440 + +1.3
1,896,441 - +0.5

Or see this region's nucleotide sequence