Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25335
Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | P. phyto PHYTO2 MOI 1 |
---|---|---|---|---|---|
remove | |||||
1,258,642 | + | -0.7 | |||
1,258,710 | - | -0.6 | |||
1,258,715 | - | +0.4 | |||
1,258,810 | - | -0.2 | |||
1,258,888 | + | -0.2 | |||
1,258,897 | - | +1.0 | |||
1,258,934 | - | BPHYT_RS25335 | 0.17 | -2.4 | |
1,259,428 | - | -0.6 | |||
1,259,592 | + | BPHYT_RS25340 | 0.24 | +0.2 | |
1,259,634 | + | BPHYT_RS25340 | 0.28 | -2.0 | |
1,259,896 | - | BPHYT_RS25340 | 0.51 | -0.3 |
Or see this region's nucleotide sequence