Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25335

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25330 and BPHYT_RS25335 are separated by 284 nucleotidesBPHYT_RS25335 and BPHYT_RS25340 are separated by 124 nucleotides BPHYT_RS25330: BPHYT_RS25330 - hypothetical protein, at 1,257,215 to 1,258,597 _RS25330 BPHYT_RS25335: BPHYT_RS25335 - hypothetical protein, at 1,258,882 to 1,259,196 _RS25335 BPHYT_RS25340: BPHYT_RS25340 - sulfatase, at 1,259,321 to 1,260,448 _RS25340 Position (kb) 1258 1259 1260Strain fitness (log2 ratio) -2 -1 0 1at 1258.642 kb on + strandat 1258.710 kb on - strandat 1258.715 kb on - strandat 1258.810 kb on - strandat 1258.888 kb on + strandat 1258.897 kb on - strandat 1258.934 kb on - strand, within BPHYT_RS25335at 1259.428 kb on - strandat 1259.592 kb on + strand, within BPHYT_RS25340at 1259.634 kb on + strand, within BPHYT_RS25340at 1259.896 kb on - strand, within BPHYT_RS25340

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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1,258,642 + -0.7
1,258,710 - -0.6
1,258,715 - +0.4
1,258,810 - -0.2
1,258,888 + -0.2
1,258,897 - +1.0
1,258,934 - BPHYT_RS25335 0.17 -2.4
1,259,428 - -0.6
1,259,592 + BPHYT_RS25340 0.24 +0.2
1,259,634 + BPHYT_RS25340 0.28 -2.0
1,259,896 - BPHYT_RS25340 0.51 -0.3

Or see this region's nucleotide sequence