Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25095

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25090 and BPHYT_RS25095 are separated by 580 nucleotidesBPHYT_RS25095 and BPHYT_RS25100 are separated by 300 nucleotides BPHYT_RS25090: BPHYT_RS25090 - hypothetical protein, at 1,201,082 to 1,201,603 _RS25090 BPHYT_RS25095: BPHYT_RS25095 - AraC family transcriptional regulator, at 1,202,184 to 1,203,266 _RS25095 BPHYT_RS25100: BPHYT_RS25100 - serine dehydratase, at 1,203,567 to 1,204,961 _RS25100 Position (kb) 1202 1203 1204Strain fitness (log2 ratio) -1 0 1at 1201.570 kb on + strandat 1201.805 kb on + strandat 1201.807 kb on + strandat 1201.896 kb on + strandat 1202.366 kb on + strand, within BPHYT_RS25095at 1202.420 kb on - strand, within BPHYT_RS25095at 1202.730 kb on - strand, within BPHYT_RS25095at 1202.842 kb on + strand, within BPHYT_RS25095at 1203.524 kb on - strandat 1204.020 kb on + strand, within BPHYT_RS25100at 1204.020 kb on + strand, within BPHYT_RS25100

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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1,201,570 + -0.6
1,201,805 + -0.4
1,201,807 + +0.2
1,201,896 + -1.1
1,202,366 + BPHYT_RS25095 0.17 -0.2
1,202,420 - BPHYT_RS25095 0.22 +0.2
1,202,730 - BPHYT_RS25095 0.50 +0.2
1,202,842 + BPHYT_RS25095 0.61 +1.1
1,203,524 - -0.4
1,204,020 + BPHYT_RS25100 0.32 +0.7
1,204,020 + BPHYT_RS25100 0.32 +1.6

Or see this region's nucleotide sequence