Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23760 and BPHYT_RS23765 overlap by 11 nucleotides BPHYT_RS23765 and BPHYT_RS23770 are separated by 82 nucleotides BPHYT_RS23770 and BPHYT_RS23775 are separated by 56 nucleotides
BPHYT_RS23760: BPHYT_RS23760 - phosphonate ABC transporter permease, at 897,801 to 898,757
_RS23760
BPHYT_RS23765: BPHYT_RS23765 - phosphonate ABC transporter permease, at 898,747 to 899,610
_RS23765
BPHYT_RS23770: BPHYT_RS23770 - GntR family transcriptional regulator, at 899,693 to 900,427
_RS23770
BPHYT_RS23775: BPHYT_RS23775 - phosphonoacetate hydrolase, at 900,484 to 901,773
_RS23775
Position (kb) 899
900
901 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 898.707 kb on + strand at 898.789 kb on - strand at 899.453 kb on - strand, within BPHYT_RS23765 at 899.512 kb on + strand, within BPHYT_RS23765 at 899.512 kb on + strand, within BPHYT_RS23765 at 899.512 kb on + strand, within BPHYT_RS23765 at 899.662 kb on + strand at 899.662 kb on + strand at 899.663 kb on - strand at 899.663 kb on - strand at 900.111 kb on - strand, within BPHYT_RS23770 at 900.173 kb on + strand, within BPHYT_RS23770 at 900.397 kb on - strand at 900.448 kb on + strand at 900.492 kb on + strand at 900.500 kb on + strand at 900.500 kb on + strand at 900.500 kb on + strand at 900.758 kb on + strand, within BPHYT_RS23775 at 900.769 kb on + strand, within BPHYT_RS23775 at 901.039 kb on + strand, within BPHYT_RS23775 at 901.039 kb on + strand, within BPHYT_RS23775 at 901.039 kb on + strand, within BPHYT_RS23775 at 901.114 kb on + strand, within BPHYT_RS23775 at 901.114 kb on + strand, within BPHYT_RS23775 at 901.115 kb on - strand, within BPHYT_RS23775 at 901.115 kb on - strand, within BPHYT_RS23775 at 901.132 kb on + strand, within BPHYT_RS23775 at 901.181 kb on - strand, within BPHYT_RS23775 at 901.181 kb on - strand, within BPHYT_RS23775 at 901.300 kb on + strand, within BPHYT_RS23775 at 901.301 kb on - strand, within BPHYT_RS23775 at 901.373 kb on - strand, within BPHYT_RS23775 at 901.373 kb on - strand, within BPHYT_RS23775 at 901.373 kb on - strand, within BPHYT_RS23775
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 898,707 + -2.3 898,789 - -0.1 899,453 - BPHYT_RS23765 0.82 -1.4 899,512 + BPHYT_RS23765 0.89 -1.3 899,512 + BPHYT_RS23765 0.89 -0.5 899,512 + BPHYT_RS23765 0.89 -0.9 899,662 + +2.6 899,662 + +0.3 899,663 - -0.1 899,663 - +0.1 900,111 - BPHYT_RS23770 0.57 +0.0 900,173 + BPHYT_RS23770 0.65 -3.1 900,397 - -3.0 900,448 + -0.2 900,492 + -1.3 900,500 + +0.1 900,500 + +0.6 900,500 + -0.9 900,758 + BPHYT_RS23775 0.21 -1.4 900,769 + BPHYT_RS23775 0.22 -2.6 901,039 + BPHYT_RS23775 0.43 -2.7 901,039 + BPHYT_RS23775 0.43 -0.0 901,039 + BPHYT_RS23775 0.43 +0.1 901,114 + BPHYT_RS23775 0.49 +0.0 901,114 + BPHYT_RS23775 0.49 -0.9 901,115 - BPHYT_RS23775 0.49 +0.5 901,115 - BPHYT_RS23775 0.49 +0.7 901,132 + BPHYT_RS23775 0.50 +1.6 901,181 - BPHYT_RS23775 0.54 -0.0 901,181 - BPHYT_RS23775 0.54 +0.8 901,300 + BPHYT_RS23775 0.63 +0.4 901,301 - BPHYT_RS23775 0.63 -0.6 901,373 - BPHYT_RS23775 0.69 -0.8 901,373 - BPHYT_RS23775 0.69 +0.0 901,373 - BPHYT_RS23775 0.69 +0.0
Or see this region's nucleotide sequence