Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23630

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23625 and BPHYT_RS23630 are separated by 306 nucleotidesBPHYT_RS23630 and BPHYT_RS23635 are separated by 177 nucleotides BPHYT_RS23625: BPHYT_RS23625 - membrane protein, at 871,382 to 871,936 _RS23625 BPHYT_RS23630: BPHYT_RS23630 - hypothetical protein, at 872,243 to 872,503 _RS23630 BPHYT_RS23635: BPHYT_RS23635 - phosphoesterase, at 872,681 to 874,687 _RS23635 Position (kb) 872 873Strain fitness (log2 ratio) -3 -2 -1 0 1at 871.316 kb on - strandat 871.316 kb on - strandat 871.500 kb on + strand, within BPHYT_RS23625at 871.566 kb on + strand, within BPHYT_RS23625at 871.626 kb on + strand, within BPHYT_RS23625at 871.626 kb on + strand, within BPHYT_RS23625at 872.004 kb on + strandat 872.004 kb on + strandat 872.005 kb on - strandat 872.188 kb on + strandat 872.188 kb on + strandat 872.275 kb on + strandat 872.275 kb on + strand, within BPHYT_RS23630at 872.411 kb on + strand, within BPHYT_RS23630at 872.412 kb on - strand, within BPHYT_RS23630at 872.633 kb on + strandat 873.460 kb on - strand, within BPHYT_RS23635at 873.460 kb on - strand, within BPHYT_RS23635

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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871,316 - +0.6
871,316 - +0.9
871,500 + BPHYT_RS23625 0.21 +0.3
871,566 + BPHYT_RS23625 0.33 -2.1
871,626 + BPHYT_RS23625 0.44 -1.9
871,626 + BPHYT_RS23625 0.44 +0.8
872,004 + -2.3
872,004 + -1.2
872,005 - -0.1
872,188 + -3.0
872,188 + -2.1
872,275 + +1.3
872,275 + BPHYT_RS23630 0.12 -1.7
872,411 + BPHYT_RS23630 0.64 -1.4
872,412 - BPHYT_RS23630 0.65 -1.3
872,633 + +0.2
873,460 - BPHYT_RS23635 0.39 -1.1
873,460 - BPHYT_RS23635 0.39 +0.4

Or see this region's nucleotide sequence