Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23580 and BPHYT_RS23585 are separated by 84 nucleotides BPHYT_RS23585 and BPHYT_RS23590 are separated by 18 nucleotides
BPHYT_RS23580: BPHYT_RS23580 - hypothetical protein, at 862,660 to 863,697
_RS23580
BPHYT_RS23585: BPHYT_RS23585 - chemotaxis protein CheY, at 863,782 to 866,340
_RS23585
BPHYT_RS23590: BPHYT_RS23590 - hypothetical protein, at 866,359 to 867,585
_RS23590
Position (kb) 863
864
865
866
867 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 862.784 kb on - strand, within BPHYT_RS23580 at 862.954 kb on - strand, within BPHYT_RS23580 at 863.072 kb on - strand, within BPHYT_RS23580 at 863.149 kb on + strand, within BPHYT_RS23580 at 863.151 kb on + strand, within BPHYT_RS23580 at 863.152 kb on - strand, within BPHYT_RS23580 at 863.198 kb on + strand, within BPHYT_RS23580 at 863.254 kb on + strand, within BPHYT_RS23580 at 863.254 kb on + strand, within BPHYT_RS23580 at 863.421 kb on + strand, within BPHYT_RS23580 at 863.446 kb on + strand, within BPHYT_RS23580 at 863.446 kb on + strand, within BPHYT_RS23580 at 863.447 kb on - strand, within BPHYT_RS23580 at 863.447 kb on - strand, within BPHYT_RS23580 at 863.825 kb on + strand at 864.184 kb on + strand, within BPHYT_RS23585 at 864.423 kb on + strand, within BPHYT_RS23585 at 864.424 kb on - strand, within BPHYT_RS23585 at 864.424 kb on - strand, within BPHYT_RS23585 at 864.531 kb on - strand, within BPHYT_RS23585 at 864.750 kb on + strand, within BPHYT_RS23585 at 864.752 kb on + strand, within BPHYT_RS23585 at 865.389 kb on + strand, within BPHYT_RS23585 at 865.494 kb on + strand, within BPHYT_RS23585 at 865.494 kb on + strand, within BPHYT_RS23585 at 865.495 kb on - strand, within BPHYT_RS23585 at 865.495 kb on - strand, within BPHYT_RS23585 at 865.495 kb on - strand, within BPHYT_RS23585 at 865.495 kb on - strand, within BPHYT_RS23585 at 865.599 kb on - strand, within BPHYT_RS23585 at 865.601 kb on - strand, within BPHYT_RS23585 at 865.812 kb on + strand, within BPHYT_RS23585 at 866.087 kb on + strand at 866.108 kb on + strand at 866.108 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.236 kb on + strand at 866.236 kb on + strand at 866.240 kb on + strand at 866.241 kb on - strand at 866.244 kb on - strand at 866.335 kb on + strand at 866.360 kb on + strand at 866.360 kb on + strand at 866.361 kb on - strand at 866.569 kb on - strand, within BPHYT_RS23590 at 866.570 kb on + strand, within BPHYT_RS23590 at 866.571 kb on - strand, within BPHYT_RS23590 at 866.646 kb on + strand, within BPHYT_RS23590 at 866.647 kb on - strand, within BPHYT_RS23590 at 866.647 kb on - strand, within BPHYT_RS23590 at 866.648 kb on + strand, within BPHYT_RS23590 at 866.648 kb on + strand, within BPHYT_RS23590 at 866.649 kb on - strand, within BPHYT_RS23590 at 866.655 kb on + strand, within BPHYT_RS23590 at 866.656 kb on - strand, within BPHYT_RS23590 at 866.656 kb on - strand, within BPHYT_RS23590 at 866.656 kb on - strand, within BPHYT_RS23590 at 866.656 kb on - strand, within BPHYT_RS23590 at 866.955 kb on - strand, within BPHYT_RS23590 at 866.995 kb on + strand, within BPHYT_RS23590 at 867.131 kb on + strand, within BPHYT_RS23590 at 867.132 kb on - strand, within BPHYT_RS23590 at 867.143 kb on + strand, within BPHYT_RS23590 at 867.285 kb on + strand, within BPHYT_RS23590
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 862,784 - BPHYT_RS23580 0.12 -0.5 862,954 - BPHYT_RS23580 0.28 +0.2 863,072 - BPHYT_RS23580 0.40 +1.4 863,149 + BPHYT_RS23580 0.47 +1.7 863,151 + BPHYT_RS23580 0.47 -0.6 863,152 - BPHYT_RS23580 0.47 -0.4 863,198 + BPHYT_RS23580 0.52 -0.3 863,254 + BPHYT_RS23580 0.57 -1.0 863,254 + BPHYT_RS23580 0.57 +0.7 863,421 + BPHYT_RS23580 0.73 +2.7 863,446 + BPHYT_RS23580 0.76 +0.7 863,446 + BPHYT_RS23580 0.76 +0.6 863,447 - BPHYT_RS23580 0.76 +0.8 863,447 - BPHYT_RS23580 0.76 -1.3 863,825 + -0.2 864,184 + BPHYT_RS23585 0.16 -0.4 864,423 + BPHYT_RS23585 0.25 -0.8 864,424 - BPHYT_RS23585 0.25 +0.6 864,424 - BPHYT_RS23585 0.25 -1.6 864,531 - BPHYT_RS23585 0.29 -2.0 864,750 + BPHYT_RS23585 0.38 -0.0 864,752 + BPHYT_RS23585 0.38 -1.4 865,389 + BPHYT_RS23585 0.63 +0.3 865,494 + BPHYT_RS23585 0.67 -1.9 865,494 + BPHYT_RS23585 0.67 -0.2 865,495 - BPHYT_RS23585 0.67 -0.0 865,495 - BPHYT_RS23585 0.67 -1.7 865,495 - BPHYT_RS23585 0.67 +0.1 865,495 - BPHYT_RS23585 0.67 -2.1 865,599 - BPHYT_RS23585 0.71 -0.3 865,601 - BPHYT_RS23585 0.71 -0.2 865,812 + BPHYT_RS23585 0.79 -0.8 866,087 + -0.5 866,108 + -1.7 866,108 + -1.6 866,225 + +1.7 866,225 + -2.2 866,236 + +0.7 866,236 + +0.2 866,240 + +0.7 866,241 - -1.7 866,244 - +3.1 866,335 + -1.1 866,360 + -0.4 866,360 + +0.4 866,361 - +1.4 866,569 - BPHYT_RS23590 0.17 -1.2 866,570 + BPHYT_RS23590 0.17 +0.7 866,571 - BPHYT_RS23590 0.17 +0.7 866,646 + BPHYT_RS23590 0.23 -0.1 866,647 - BPHYT_RS23590 0.23 +0.8 866,647 - BPHYT_RS23590 0.23 +1.2 866,648 + BPHYT_RS23590 0.24 -0.3 866,648 + BPHYT_RS23590 0.24 +0.1 866,649 - BPHYT_RS23590 0.24 -1.4 866,655 + BPHYT_RS23590 0.24 -0.2 866,656 - BPHYT_RS23590 0.24 -3.2 866,656 - BPHYT_RS23590 0.24 -0.7 866,656 - BPHYT_RS23590 0.24 -1.3 866,656 - BPHYT_RS23590 0.24 -0.6 866,955 - BPHYT_RS23590 0.49 -0.7 866,995 + BPHYT_RS23590 0.52 -3.2 867,131 + BPHYT_RS23590 0.63 +0.4 867,132 - BPHYT_RS23590 0.63 -0.8 867,143 + BPHYT_RS23590 0.64 +1.9 867,285 + BPHYT_RS23590 0.75 +1.1
Or see this region's nucleotide sequence