Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23565 and BPHYT_RS23570 are separated by 351 nucleotides BPHYT_RS23570 and BPHYT_RS23575 are separated by 28 nucleotides
BPHYT_RS23565: BPHYT_RS23565 - ABC transporter, at 857,605 to 859,398
_RS23565
BPHYT_RS23570: BPHYT_RS23570 - chemotaxis protein CheY, at 859,750 to 860,916
_RS23570
BPHYT_RS23575: BPHYT_RS23575 - hypothetical protein, at 860,945 to 862,186
_RS23575
Position (kb) 859
860
861 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 858.820 kb on - strand at 859.061 kb on + strand, within BPHYT_RS23565 at 859.638 kb on - strand at 859.639 kb on + strand at 859.890 kb on - strand, within BPHYT_RS23570 at 860.273 kb on - strand, within BPHYT_RS23570 at 860.336 kb on - strand, within BPHYT_RS23570 at 860.336 kb on - strand, within BPHYT_RS23570 at 860.722 kb on + strand, within BPHYT_RS23570 at 860.723 kb on - strand, within BPHYT_RS23570 at 860.723 kb on - strand, within BPHYT_RS23570 at 860.827 kb on - strand at 860.896 kb on - strand at 860.983 kb on - strand at 861.081 kb on + strand, within BPHYT_RS23575 at 861.087 kb on + strand, within BPHYT_RS23575 at 861.088 kb on - strand, within BPHYT_RS23575 at 861.249 kb on + strand, within BPHYT_RS23575 at 861.273 kb on + strand, within BPHYT_RS23575 at 861.273 kb on + strand, within BPHYT_RS23575 at 861.274 kb on - strand, within BPHYT_RS23575 at 861.274 kb on - strand, within BPHYT_RS23575 at 861.277 kb on + strand, within BPHYT_RS23575 at 861.306 kb on + strand, within BPHYT_RS23575 at 861.306 kb on + strand, within BPHYT_RS23575 at 861.306 kb on + strand, within BPHYT_RS23575 at 861.421 kb on + strand, within BPHYT_RS23575 at 861.454 kb on + strand, within BPHYT_RS23575 at 861.604 kb on + strand, within BPHYT_RS23575 at 861.606 kb on + strand, within BPHYT_RS23575 at 861.607 kb on - strand, within BPHYT_RS23575 at 861.607 kb on - strand, within BPHYT_RS23575 at 861.607 kb on - strand, within BPHYT_RS23575 at 861.607 kb on - strand, within BPHYT_RS23575 at 861.684 kb on + strand, within BPHYT_RS23575 at 861.751 kb on - strand, within BPHYT_RS23575 at 861.796 kb on - strand, within BPHYT_RS23575 at 861.796 kb on - strand, within BPHYT_RS23575 at 861.796 kb on - strand, within BPHYT_RS23575 at 861.852 kb on + strand, within BPHYT_RS23575 at 861.853 kb on - strand, within BPHYT_RS23575 at 861.853 kb on - strand, within BPHYT_RS23575 at 861.853 kb on - strand, within BPHYT_RS23575
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 858,820 - +1.1 859,061 + BPHYT_RS23565 0.81 +0.6 859,638 - -1.6 859,639 + -1.7 859,890 - BPHYT_RS23570 0.12 -1.7 860,273 - BPHYT_RS23570 0.45 +0.3 860,336 - BPHYT_RS23570 0.50 -1.3 860,336 - BPHYT_RS23570 0.50 -0.5 860,722 + BPHYT_RS23570 0.83 -0.3 860,723 - BPHYT_RS23570 0.83 -3.0 860,723 - BPHYT_RS23570 0.83 -1.6 860,827 - -0.5 860,896 - +0.7 860,983 - +1.8 861,081 + BPHYT_RS23575 0.11 -0.7 861,087 + BPHYT_RS23575 0.11 +0.4 861,088 - BPHYT_RS23575 0.12 -1.5 861,249 + BPHYT_RS23575 0.24 +0.6 861,273 + BPHYT_RS23575 0.26 +0.3 861,273 + BPHYT_RS23575 0.26 +1.7 861,274 - BPHYT_RS23575 0.26 +0.3 861,274 - BPHYT_RS23575 0.26 +0.7 861,277 + BPHYT_RS23575 0.27 -0.3 861,306 + BPHYT_RS23575 0.29 -2.9 861,306 + BPHYT_RS23575 0.29 -0.4 861,306 + BPHYT_RS23575 0.29 +0.8 861,421 + BPHYT_RS23575 0.38 +0.2 861,454 + BPHYT_RS23575 0.41 +2.1 861,604 + BPHYT_RS23575 0.53 -0.3 861,606 + BPHYT_RS23575 0.53 -1.1 861,607 - BPHYT_RS23575 0.53 +0.5 861,607 - BPHYT_RS23575 0.53 -0.3 861,607 - BPHYT_RS23575 0.53 -0.5 861,607 - BPHYT_RS23575 0.53 +0.4 861,684 + BPHYT_RS23575 0.60 +0.3 861,751 - BPHYT_RS23575 0.65 -0.2 861,796 - BPHYT_RS23575 0.69 -1.7 861,796 - BPHYT_RS23575 0.69 -1.2 861,796 - BPHYT_RS23575 0.69 +1.5 861,852 + BPHYT_RS23575 0.73 -1.1 861,853 - BPHYT_RS23575 0.73 -1.3 861,853 - BPHYT_RS23575 0.73 +0.6 861,853 - BPHYT_RS23575 0.73 -0.7
Or see this region's nucleotide sequence