Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23490

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23480 and BPHYT_RS23485 are separated by 27 nucleotidesBPHYT_RS23485 and BPHYT_RS23490 are separated by 105 nucleotidesBPHYT_RS23490 and BPHYT_RS23495 are separated by 214 nucleotides BPHYT_RS23480: BPHYT_RS23480 - hypothetical protein, at 835,373 to 835,894 _RS23480 BPHYT_RS23485: BPHYT_RS23485 - glyoxalase, at 835,922 to 836,344 _RS23485 BPHYT_RS23490: BPHYT_RS23490 - hypothetical protein, at 836,450 to 836,752 _RS23490 BPHYT_RS23495: BPHYT_RS23495 - thioredoxin reductase, at 836,967 to 838,700 _RS23495 Position (kb) 836 837Strain fitness (log2 ratio) -1 0 1at 835.535 kb on + strand, within BPHYT_RS23480at 835.536 kb on - strand, within BPHYT_RS23480at 835.917 kb on - strandat 836.742 kb on - strandat 837.279 kb on + strand, within BPHYT_RS23495at 837.745 kb on - strand, within BPHYT_RS23495

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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835,535 + BPHYT_RS23480 0.31 -0.1
835,536 - BPHYT_RS23480 0.31 -0.7
835,917 - -0.8
836,742 - +0.3
837,279 + BPHYT_RS23495 0.18 -0.8
837,745 - BPHYT_RS23495 0.45 +1.1

Or see this region's nucleotide sequence