Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22370 and BPHYT_RS22375 overlap by 8 nucleotides BPHYT_RS22375 and BPHYT_RS22380 are separated by 229 nucleotides BPHYT_RS22380 and BPHYT_RS22385 are separated by 63 nucleotides
BPHYT_RS22370: BPHYT_RS22370 - alpha/beta hydrolase, at 575,487 to 576,452
_RS22370
BPHYT_RS22375: BPHYT_RS22375 - 4-hydroxybenzoyl-CoA thioesterase, at 576,445 to 576,954
_RS22375
BPHYT_RS22380: BPHYT_RS22380 - Carnitine 3-dehydrogenase (EC 1.1.1.108) <small>(from data)</small>, at 577,184 to 578,149
_RS22380
BPHYT_RS22385: BPHYT_RS22385 - hypothetical protein, at 578,213 to 579,142
_RS22385
Position (kb) 577
578
579 Strain fitness (log2 ratio) -1
0
1
2 at 576.347 kb on - strand, within BPHYT_RS22370 at 576.672 kb on - strand, within BPHYT_RS22375 at 576.752 kb on + strand, within BPHYT_RS22375 at 576.753 kb on - strand, within BPHYT_RS22375 at 576.759 kb on + strand, within BPHYT_RS22375 at 576.759 kb on + strand, within BPHYT_RS22375 at 576.760 kb on - strand, within BPHYT_RS22375 at 576.776 kb on + strand, within BPHYT_RS22375 at 576.777 kb on - strand, within BPHYT_RS22375 at 576.866 kb on + strand, within BPHYT_RS22375 at 576.867 kb on - strand, within BPHYT_RS22375 at 576.893 kb on + strand, within BPHYT_RS22375 at 577.440 kb on + strand, within BPHYT_RS22380 at 577.440 kb on + strand, within BPHYT_RS22380 at 577.441 kb on - strand, within BPHYT_RS22380 at 577.636 kb on - strand, within BPHYT_RS22380 at 577.711 kb on - strand, within BPHYT_RS22380 at 577.767 kb on + strand, within BPHYT_RS22380 at 577.925 kb on - strand, within BPHYT_RS22380 at 578.221 kb on - strand at 578.718 kb on + strand, within BPHYT_RS22385 at 578.719 kb on - strand, within BPHYT_RS22385 at 578.719 kb on - strand, within BPHYT_RS22385 at 578.719 kb on - strand, within BPHYT_RS22385 at 578.724 kb on + strand, within BPHYT_RS22385 at 578.725 kb on - strand, within BPHYT_RS22385 at 578.949 kb on + strand, within BPHYT_RS22385 at 578.950 kb on - strand, within BPHYT_RS22385
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 576,347 - BPHYT_RS22370 0.89 -0.6 576,672 - BPHYT_RS22375 0.45 -0.5 576,752 + BPHYT_RS22375 0.60 +1.8 576,753 - BPHYT_RS22375 0.60 +1.3 576,759 + BPHYT_RS22375 0.62 -0.3 576,759 + BPHYT_RS22375 0.62 -0.5 576,760 - BPHYT_RS22375 0.62 -0.5 576,776 + BPHYT_RS22375 0.65 -0.7 576,777 - BPHYT_RS22375 0.65 +0.5 576,866 + BPHYT_RS22375 0.83 -1.5 576,867 - BPHYT_RS22375 0.83 -0.4 576,893 + BPHYT_RS22375 0.88 +0.0 577,440 + BPHYT_RS22380 0.27 -0.3 577,440 + BPHYT_RS22380 0.27 +0.6 577,441 - BPHYT_RS22380 0.27 +1.8 577,636 - BPHYT_RS22380 0.47 -0.4 577,711 - BPHYT_RS22380 0.55 +0.1 577,767 + BPHYT_RS22380 0.60 +0.3 577,925 - BPHYT_RS22380 0.77 +0.6 578,221 - +0.6 578,718 + BPHYT_RS22385 0.54 +0.6 578,719 - BPHYT_RS22385 0.54 +0.3 578,719 - BPHYT_RS22385 0.54 +0.2 578,719 - BPHYT_RS22385 0.54 +2.0 578,724 + BPHYT_RS22385 0.55 -0.5 578,725 - BPHYT_RS22385 0.55 +0.3 578,949 + BPHYT_RS22385 0.79 +0.4 578,950 - BPHYT_RS22385 0.79 -0.0
Or see this region's nucleotide sequence