Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21725 and BPHYT_RS21730 are separated by 345 nucleotides BPHYT_RS21730 and BPHYT_RS21735 are separated by 42 nucleotides BPHYT_RS21735 and BPHYT_RS21740 are separated by 118 nucleotides
BPHYT_RS21725: BPHYT_RS21725 - taurine ABC transporter substrate-binding protein, at 429,989 to 431,023
_RS21725
BPHYT_RS21730: BPHYT_RS21730 - 2-aminoadipate aminotransferase, at 431,369 to 432,895
_RS21730
BPHYT_RS21735: BPHYT_RS21735 - IclR family transcriptional regulator, at 432,938 to 433,690
_RS21735
BPHYT_RS21740: BPHYT_RS21740 - IclR family transcriptional regulator, at 433,809 to 434,645
_RS21740
Position (kb) 431
432
433 Strain fitness (log2 ratio) -2
-1
0
1 at 430.908 kb on + strand, within BPHYT_RS21725 at 431.050 kb on + strand at 431.062 kb on + strand at 431.214 kb on - strand at 431.223 kb on + strand at 431.223 kb on + strand at 431.223 kb on + strand at 431.594 kb on + strand, within BPHYT_RS21730 at 431.860 kb on + strand, within BPHYT_RS21730 at 431.861 kb on - strand, within BPHYT_RS21730 at 432.024 kb on + strand, within BPHYT_RS21730 at 432.024 kb on + strand, within BPHYT_RS21730 at 432.026 kb on + strand, within BPHYT_RS21730 at 432.103 kb on + strand, within BPHYT_RS21730 at 432.206 kb on + strand, within BPHYT_RS21730 at 432.206 kb on + strand, within BPHYT_RS21730 at 432.207 kb on - strand, within BPHYT_RS21730 at 432.393 kb on - strand, within BPHYT_RS21730 at 432.440 kb on + strand, within BPHYT_RS21730 at 432.516 kb on - strand, within BPHYT_RS21730 at 432.591 kb on - strand, within BPHYT_RS21730 at 433.048 kb on + strand, within BPHYT_RS21735 at 433.126 kb on + strand, within BPHYT_RS21735 at 433.350 kb on + strand, within BPHYT_RS21735 at 433.350 kb on + strand, within BPHYT_RS21735 at 433.351 kb on - strand, within BPHYT_RS21735 at 433.725 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 430,908 + BPHYT_RS21725 0.89 -1.3 431,050 + -0.1 431,062 + -0.1 431,214 - -0.3 431,223 + +1.6 431,223 + -2.0 431,223 + +1.1 431,594 + BPHYT_RS21730 0.15 -0.9 431,860 + BPHYT_RS21730 0.32 +0.2 431,861 - BPHYT_RS21730 0.32 -0.3 432,024 + BPHYT_RS21730 0.43 -0.5 432,024 + BPHYT_RS21730 0.43 -0.8 432,026 + BPHYT_RS21730 0.43 -0.1 432,103 + BPHYT_RS21730 0.48 -1.3 432,206 + BPHYT_RS21730 0.55 -0.6 432,206 + BPHYT_RS21730 0.55 -2.1 432,207 - BPHYT_RS21730 0.55 -0.2 432,393 - BPHYT_RS21730 0.67 -0.1 432,440 + BPHYT_RS21730 0.70 +0.1 432,516 - BPHYT_RS21730 0.75 -2.2 432,591 - BPHYT_RS21730 0.80 +1.3 433,048 + BPHYT_RS21735 0.15 -0.0 433,126 + BPHYT_RS21735 0.25 -2.1 433,350 + BPHYT_RS21735 0.55 -0.8 433,350 + BPHYT_RS21735 0.55 -0.2 433,351 - BPHYT_RS21735 0.55 -0.2 433,725 + -0.7
Or see this region's nucleotide sequence