Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20420

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
143,170	+		BPHYT_RS20415	0.11	+2.3
143,170	+		BPHYT_RS20415	0.11	-1.6
143,171	-		BPHYT_RS20415	0.11	-1.4
143,497	+		BPHYT_RS20415	0.46	-0.9
143,497	+		BPHYT_RS20415	0.46	-0.3
143,498	-		BPHYT_RS20415	0.47	-0.6
143,671	+		BPHYT_RS20415	0.65	-1.2
143,685	+		BPHYT_RS20415	0.67	+0.4
143,706	-		BPHYT_RS20415	0.69	+0.1
143,707	+		BPHYT_RS20415	0.69	-1.6
143,708	-		BPHYT_RS20415	0.69	+1.9
143,851	+		BPHYT_RS20415	0.85	-0.7
144,223	-				-0.4
144,223	-				+0.6
144,226	+				+0.7
144,227	-				+0.6
144,227	-				-1.3
144,721	-		BPHYT_RS20420	0.39	+0.9
145,142	+		BPHYT_RS20420	0.67	+0.4
145,250	+		BPHYT_RS20420	0.74	+0.2
145,470	-		BPHYT_RS20420	0.88	-1.3
145,520	+				-1.1
145,521	-				-0.1
145,541	+				+0.8
145,541	+				+0.2
145,541	+				-0.2
145,542	-				-0.3
145,544	+				+0.3
145,798	+				+0.7
145,876	+				-0.6
145,899	+				+0.2
145,904	-				+2.0
146,124	+		BPHYT_RS20425	0.15	-0.3
146,304	-		BPHYT_RS20425	0.73	+0.2
146,307	-		BPHYT_RS20425	0.74	+0.0
146,466	+				-0.8
146,466	+				-0.1
146,467	-				-1.5
146,467	-				-0.9
146,509	-				-0.1
146,596	+				+0.3
146,596	+				-0.7
146,597	-				-0.5