Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18910

Experiment: P. phyto PHYTO2 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS18900 and BPHYT_RS18905 are separated by 201 nucleotidesBPHYT_RS18905 and BPHYT_RS18910 are separated by 94 nucleotidesBPHYT_RS18910 and BPHYT_RS18915 are separated by 308 nucleotidesBPHYT_RS18915 and BPHYT_RS18920 overlap by 4 nucleotidesBPHYT_RS18920 and BPHYT_RS18925 are separated by 60 nucleotides BPHYT_RS18900: BPHYT_RS18900 - flagella basal body P-ring formation protein FlgA, at 4,246,027 to 4,247,541 _RS18900 BPHYT_RS18905: BPHYT_RS18905 - anti-sigma-28 factor FlgM, at 4,247,743 to 4,248,096 _RS18905 BPHYT_RS18910: BPHYT_RS18910 - FlgN, at 4,248,191 to 4,248,637 _RS18910 BPHYT_RS18915: BPHYT_RS18915 - hypothetical protein, at 4,248,946 to 4,249,128 _RS18915 BPHYT_RS18920: BPHYT_RS18920 - hypothetical protein, at 4,249,125 to 4,249,535 _RS18920 BPHYT_RS18925: BPHYT_RS18925 - RNA polymerase sigma70, at 4,249,596 to 4,250,330 _RS18925 Position (kb) 4248 4249Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4247.656 kb on + strandat 4247.656 kb on + strandat 4247.657 kb on - strandat 4247.657 kb on - strandat 4247.657 kb on - strandat 4247.666 kb on + strandat 4247.712 kb on + strandat 4247.714 kb on + strandat 4247.714 kb on + strandat 4247.714 kb on + strandat 4248.111 kb on + strandat 4248.503 kb on - strand, within BPHYT_RS18910at 4248.539 kb on + strand, within BPHYT_RS18910at 4248.540 kb on - strand, within BPHYT_RS18910at 4248.596 kb on + strandat 4248.597 kb on - strandat 4248.775 kb on - strandat 4248.837 kb on + strandat 4248.837 kb on + strandat 4248.838 kb on - strandat 4248.896 kb on + strandat 4248.945 kb on + strandat 4249.411 kb on + strand, within BPHYT_RS18920at 4249.411 kb on + strand, within BPHYT_RS18920at 4249.415 kb on + strand, within BPHYT_RS18920at 4249.415 kb on + strand, within BPHYT_RS18920at 4249.421 kb on + strand, within BPHYT_RS18920at 4249.421 kb on + strand, within BPHYT_RS18920at 4249.461 kb on + strand, within BPHYT_RS18920

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
remove
4,247,656 + -0.4
4,247,656 + +0.1
4,247,657 - -0.9
4,247,657 - -0.5
4,247,657 - -2.4
4,247,666 + +0.1
4,247,712 + -0.2
4,247,714 + -0.2
4,247,714 + -0.2
4,247,714 + +0.3
4,248,111 + -1.1
4,248,503 - BPHYT_RS18910 0.70 -1.1
4,248,539 + BPHYT_RS18910 0.78 -1.1
4,248,540 - BPHYT_RS18910 0.78 -0.7
4,248,596 + +0.6
4,248,597 - +0.2
4,248,775 - -0.9
4,248,837 + +2.5
4,248,837 + -0.2
4,248,838 - -0.0
4,248,896 + +0.6
4,248,945 + -1.6
4,249,411 + BPHYT_RS18920 0.70 -2.6
4,249,411 + BPHYT_RS18920 0.70 -0.3
4,249,415 + BPHYT_RS18920 0.71 -3.0
4,249,415 + BPHYT_RS18920 0.71 +0.2
4,249,421 + BPHYT_RS18920 0.72 +0.1
4,249,421 + BPHYT_RS18920 0.72 -3.3
4,249,461 + BPHYT_RS18920 0.82 +0.5

Or see this region's nucleotide sequence