Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18825 and BPHYT_RS18830 are separated by 49 nucleotides BPHYT_RS18830 and BPHYT_RS18835 are separated by 37 nucleotides BPHYT_RS18835 and BPHYT_RS18840 are separated by 97 nucleotides
BPHYT_RS18825: BPHYT_RS18825 - flagellar biosynthesis protein FliP, at 4,231,336 to 4,232,169
_RS18825
BPHYT_RS18830: BPHYT_RS18830 - flagellar biosynthesis protein FliQ, at 4,232,219 to 4,232,488
_RS18830
BPHYT_RS18835: BPHYT_RS18835 - flagellar biosynthesis protein FliR, at 4,232,526 to 4,233,308
_RS18835
BPHYT_RS18840: BPHYT_RS18840 - flagellar hook-associated protein FlgL, at 4,233,406 to 4,234,629
_RS18840
Position (kb) 4232
4233
4234 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4231.547 kb on - strand, within BPHYT_RS18825 at 4231.759 kb on + strand, within BPHYT_RS18825 at 4231.760 kb on - strand, within BPHYT_RS18825 at 4231.761 kb on + strand, within BPHYT_RS18825 at 4231.762 kb on - strand, within BPHYT_RS18825 at 4231.762 kb on - strand, within BPHYT_RS18825 at 4231.772 kb on - strand, within BPHYT_RS18825 at 4232.083 kb on - strand, within BPHYT_RS18825 at 4232.261 kb on + strand, within BPHYT_RS18830 at 4232.261 kb on + strand, within BPHYT_RS18830 at 4232.261 kb on + strand, within BPHYT_RS18830 at 4232.261 kb on + strand, within BPHYT_RS18830 at 4232.261 kb on + strand, within BPHYT_RS18830 at 4232.261 kb on + strand, within BPHYT_RS18830 at 4232.261 kb on + strand, within BPHYT_RS18830 at 4232.261 kb on + strand at 4232.261 kb on + strand, within BPHYT_RS18830 at 4232.262 kb on - strand, within BPHYT_RS18830 at 4232.262 kb on - strand, within BPHYT_RS18830 at 4232.262 kb on - strand, within BPHYT_RS18830 at 4232.262 kb on - strand, within BPHYT_RS18830 at 4232.262 kb on - strand, within BPHYT_RS18830 at 4232.262 kb on - strand, within BPHYT_RS18830 at 4232.262 kb on - strand, within BPHYT_RS18830 at 4232.262 kb on - strand, within BPHYT_RS18830 at 4232.262 kb on - strand, within BPHYT_RS18830 at 4232.911 kb on - strand, within BPHYT_RS18835 at 4233.060 kb on - strand, within BPHYT_RS18835 at 4233.234 kb on - strand at 4233.234 kb on - strand at 4233.269 kb on + strand at 4233.306 kb on + strand at 4233.395 kb on + strand at 4233.405 kb on - strand at 4233.792 kb on + strand, within BPHYT_RS18840 at 4233.928 kb on - strand, within BPHYT_RS18840 at 4233.929 kb on + strand, within BPHYT_RS18840 at 4233.929 kb on + strand, within BPHYT_RS18840 at 4233.929 kb on + strand, within BPHYT_RS18840 at 4233.930 kb on - strand, within BPHYT_RS18840 at 4233.930 kb on - strand, within BPHYT_RS18840 at 4233.930 kb on - strand, within BPHYT_RS18840 at 4233.960 kb on - strand, within BPHYT_RS18840 at 4233.960 kb on - strand, within BPHYT_RS18840 at 4233.960 kb on - strand, within BPHYT_RS18840 at 4234.194 kb on - strand, within BPHYT_RS18840 at 4234.229 kb on + strand, within BPHYT_RS18840
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 4,231,547 - BPHYT_RS18825 0.25 -0.5 4,231,759 + BPHYT_RS18825 0.51 -0.7 4,231,760 - BPHYT_RS18825 0.51 +1.5 4,231,761 + BPHYT_RS18825 0.51 -0.8 4,231,762 - BPHYT_RS18825 0.51 -1.0 4,231,762 - BPHYT_RS18825 0.51 -0.2 4,231,772 - BPHYT_RS18825 0.52 -0.6 4,232,083 - BPHYT_RS18825 0.90 -2.1 4,232,261 + BPHYT_RS18830 0.16 -0.1 4,232,261 + BPHYT_RS18830 0.16 -0.1 4,232,261 + BPHYT_RS18830 0.16 -1.5 4,232,261 + BPHYT_RS18830 0.16 +0.8 4,232,261 + BPHYT_RS18830 0.16 -2.2 4,232,261 + BPHYT_RS18830 0.16 +0.2 4,232,261 + BPHYT_RS18830 0.16 -2.0 4,232,261 + -0.7 4,232,261 + BPHYT_RS18830 0.16 -0.6 4,232,262 - BPHYT_RS18830 0.16 -0.6 4,232,262 - BPHYT_RS18830 0.16 -0.7 4,232,262 - BPHYT_RS18830 0.16 -0.2 4,232,262 - BPHYT_RS18830 0.16 -1.1 4,232,262 - BPHYT_RS18830 0.16 -1.2 4,232,262 - BPHYT_RS18830 0.16 +0.6 4,232,262 - BPHYT_RS18830 0.16 -0.2 4,232,262 - BPHYT_RS18830 0.16 +0.5 4,232,262 - BPHYT_RS18830 0.16 -0.6 4,232,911 - BPHYT_RS18835 0.49 -1.0 4,233,060 - BPHYT_RS18835 0.68 -1.5 4,233,234 - +1.8 4,233,234 - -0.2 4,233,269 + -0.3 4,233,306 + +0.5 4,233,395 + -0.3 4,233,405 - -0.8 4,233,792 + BPHYT_RS18840 0.32 +0.0 4,233,928 - BPHYT_RS18840 0.43 -0.9 4,233,929 + BPHYT_RS18840 0.43 +1.9 4,233,929 + BPHYT_RS18840 0.43 +0.8 4,233,929 + BPHYT_RS18840 0.43 +0.9 4,233,930 - BPHYT_RS18840 0.43 +0.1 4,233,930 - BPHYT_RS18840 0.43 -1.3 4,233,930 - BPHYT_RS18840 0.43 -1.0 4,233,960 - BPHYT_RS18840 0.45 -0.4 4,233,960 - BPHYT_RS18840 0.45 -1.1 4,233,960 - BPHYT_RS18840 0.45 -0.1 4,234,194 - BPHYT_RS18840 0.64 -0.0 4,234,229 + BPHYT_RS18840 0.67 -0.5
Or see this region's nucleotide sequence