Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18295

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
4,111,430	-		BPHYT_RS18285	0.61	+0.3
4,111,448	+		BPHYT_RS18285	0.64	-0.7
4,111,448	+		BPHYT_RS18285	0.64	+0.3
4,111,448	+		BPHYT_RS18285	0.64	+1.2
4,111,448	+		BPHYT_RS18285	0.64	-3.3
4,111,448	+		BPHYT_RS18285	0.64	-2.6
4,111,448	+		BPHYT_RS18285	0.64	+0.5
4,111,448	+		BPHYT_RS18285	0.64	-0.9
4,111,448	+		BPHYT_RS18285	0.64	-0.4
4,111,448	+		BPHYT_RS18285	0.64	-0.0
4,111,448	+		BPHYT_RS18285	0.64	-0.6
4,111,448	+		BPHYT_RS18285	0.64	-0.3
4,111,448	+		BPHYT_RS18285	0.64	-1.0
4,111,449	-		BPHYT_RS18285	0.64	-0.1
4,111,449	-		BPHYT_RS18285	0.64	-1.9
4,111,450	+		BPHYT_RS18285	0.64	+0.4
4,111,450	+		BPHYT_RS18285	0.64	+0.7
4,111,450	+		BPHYT_RS18285	0.64	+0.6
4,111,450	+		BPHYT_RS18285	0.64	-1.6
4,111,451	-		BPHYT_RS18285	0.64	-0.1
4,111,541	+		BPHYT_RS18285	0.78	-0.5
4,111,541	+		BPHYT_RS18285	0.78	+0.4
4,111,854	+		BPHYT_RS18290	0.16	+0.9
4,111,855	-		BPHYT_RS18290	0.16	-0.1
4,111,900	-		BPHYT_RS18290	0.26	+0.0
4,111,918	+		BPHYT_RS18290	0.29	+0.4
4,112,059	+		BPHYT_RS18290	0.57	+1.3
4,112,059	+		BPHYT_RS18290	0.57	+0.3
4,112,107	+		BPHYT_RS18290	0.67	-0.7
4,112,108	-		BPHYT_RS18290	0.67	-0.5
4,112,259	+				-1.4
4,112,259	+				-1.1
4,112,356	+				-0.3
4,112,356	+				-0.6
4,112,356	+				-0.8
4,112,357	-				+0.4
4,112,364	+				-0.0
4,112,482	+				-0.1
4,112,482	+				+1.0
4,112,483	-				-2.0
4,112,483	-				+0.6
4,112,483	-				-1.6
4,112,559	+				+2.3
4,112,559	+		BPHYT_RS18295	0.12	+0.1
4,112,575	+		BPHYT_RS18295	0.14	-0.9
4,112,701	+		BPHYT_RS18295	0.25	-1.7
4,112,803	+		BPHYT_RS18295	0.34	+0.5
4,112,803	+		BPHYT_RS18295	0.34	+0.4
4,112,804	-		BPHYT_RS18295	0.35	-0.5
4,112,869	+		BPHYT_RS18295	0.40	-1.9
4,112,869	+		BPHYT_RS18295	0.40	-0.2
4,112,869	+		BPHYT_RS18295	0.40	+0.4
4,112,870	-		BPHYT_RS18295	0.41	-1.0
4,112,870	-		BPHYT_RS18295	0.41	-1.1
4,112,932	+		BPHYT_RS18295	0.46	-0.3
4,112,933	-		BPHYT_RS18295	0.46	-0.0
4,112,933	-		BPHYT_RS18295	0.46	-3.3
4,112,933	-		BPHYT_RS18295	0.46	+1.1
4,112,933	-		BPHYT_RS18295	0.46	+0.5
4,112,953	-		BPHYT_RS18295	0.48	-2.6
4,112,992	+		BPHYT_RS18295	0.52	+0.1
4,112,992	+		BPHYT_RS18295	0.52	+1.0
4,112,992	+		BPHYT_RS18295	0.52	+1.4
4,112,993	-		BPHYT_RS18295	0.52	-1.8
4,112,993	-		BPHYT_RS18295	0.52	+1.7
4,113,025	+		BPHYT_RS18295	0.55	-0.6
4,113,026	-		BPHYT_RS18295	0.55	+0.3
4,113,026	-		BPHYT_RS18295	0.55	+0.1
4,113,145	+		BPHYT_RS18295	0.66	-0.6
4,113,146	-				-0.3
4,113,157	+		BPHYT_RS18295	0.67	-0.3
4,113,158	-		BPHYT_RS18295	0.67	-0.8
4,113,206	-		BPHYT_RS18295	0.71	-1.7
4,113,206	-		BPHYT_RS18295	0.71	-0.9
4,113,206	-		BPHYT_RS18295	0.71	-0.3
4,113,238	-		BPHYT_RS18295	0.74	+0.7
4,113,238	-		BPHYT_RS18295	0.74	+0.4
4,113,238	-		BPHYT_RS18295	0.74	-1.1
4,113,265	+		BPHYT_RS18295	0.77	+1.1
4,113,266	-		BPHYT_RS18295	0.77	-1.1
4,113,266	-		BPHYT_RS18295	0.77	-0.6
4,113,268	+		BPHYT_RS18295	0.77	-0.4
4,113,268	+		BPHYT_RS18295	0.77	+0.3
4,113,268	+		BPHYT_RS18295	0.77	-0.6
4,113,269	-		BPHYT_RS18295	0.77	-2.1
4,113,269	-		BPHYT_RS18295	0.77	-0.4
4,113,275	+		BPHYT_RS18295	0.77	-0.1
4,113,554	+				+0.4
4,113,555	-				-0.4
4,113,555	-				-1.2
4,113,740	-				-0.2
4,113,896	-				+0.1
4,114,046	+				-0.0
4,114,046	+				+0.9
4,114,128	+				+1.9
4,114,128	+				-0.6
4,114,129	-				-1.3
4,114,129	-				-1.5
4,114,138	+				-0.5
4,114,139	-				-0.2
4,114,139	-				-1.4
4,114,151	+				-0.7
4,114,152	-				+1.4
4,114,152	-				-2.1
4,114,230	+				+0.3
4,114,230	+				+0.9
4,114,231	-				-2.2
4,114,231	-				-0.8
4,114,231	-				-1.8
4,114,231	-				+0.6
4,114,236	+				+0.4
4,114,236	+				+0.1
4,114,237	-				+0.9
4,114,237	-				+0.9
4,114,237	-				+0.5
4,114,237	-				-0.6
4,114,287	+				-0.0
4,114,313	+				-1.9
4,114,313	+				+0.2
4,114,314	-				+0.1
4,114,314	-				+0.4
4,114,337	+				-1.9
4,114,338	-				-1.2
4,114,423	+				+1.3