Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17750

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
4,006,693	+		BPHYT_RS17745	0.16	+2.0
4,006,694	-		BPHYT_RS17745	0.16	+1.1
4,006,733	-		BPHYT_RS17745	0.23	+2.0
4,006,733	-		BPHYT_RS17745	0.23	+1.9
4,006,760	-		BPHYT_RS17745	0.27	+1.2
4,006,897	+		BPHYT_RS17745	0.48	+2.2
4,006,898	-		BPHYT_RS17745	0.49	+4.9
4,006,898	-		BPHYT_RS17745	0.49	+2.0
4,006,901	+		BPHYT_RS17745	0.49	+3.3
4,006,901	+		BPHYT_RS17745	0.49	+1.7
4,007,245	-				-0.2
4,007,268	+				+2.6
4,007,268	+				+2.9
4,007,268	+				+1.7
4,007,268	+				+1.8
4,007,269	-				+0.5
4,007,269	-				+0.3
4,007,269	-				+2.3
4,007,314	+				+2.4
4,007,314	+				+2.3
4,007,315	-				-0.2
4,007,636	+		BPHYT_RS17750	0.29	+2.4
4,007,636	+		BPHYT_RS17750	0.29	+1.6
4,007,636	+		BPHYT_RS17750	0.29	+0.8
4,007,637	-		BPHYT_RS17750	0.29	-0.4
4,007,678	+		BPHYT_RS17750	0.33	+1.7
4,007,678	+		BPHYT_RS17750	0.33	+2.3
4,007,679	-		BPHYT_RS17750	0.33	+1.7
4,007,697	-		BPHYT_RS17750	0.35	+1.7
4,007,697	-		BPHYT_RS17750	0.35	+0.7
4,007,717	+		BPHYT_RS17750	0.37	+1.6
4,007,718	-		BPHYT_RS17750	0.37	+5.1
4,007,828	+		BPHYT_RS17750	0.48	+1.8
4,007,829	-		BPHYT_RS17750	0.48	+0.9
4,007,829	-		BPHYT_RS17750	0.48	+1.0
4,007,829	-		BPHYT_RS17750	0.48	+1.9
4,007,846	+		BPHYT_RS17750	0.50	+2.0
4,007,846	+		BPHYT_RS17750	0.50	+1.5
4,007,847	-		BPHYT_RS17750	0.50	+1.2
4,007,847	-		BPHYT_RS17750	0.50	+0.2
4,007,847	-		BPHYT_RS17750	0.50	-0.7
4,007,847	-		BPHYT_RS17750	0.50	+2.1
4,007,849	+		BPHYT_RS17750	0.50	+2.0
4,007,849	+		BPHYT_RS17750	0.50	+1.3
4,007,849	+		BPHYT_RS17750	0.50	+1.9
4,007,849	+		BPHYT_RS17750	0.50	+0.2
4,007,849	+		BPHYT_RS17750	0.50	+1.9
4,007,849	+		BPHYT_RS17750	0.50	+0.4
4,007,849	+		BPHYT_RS17750	0.50	+1.9
4,007,850	-		BPHYT_RS17750	0.50	+0.9
4,007,850	-		BPHYT_RS17750	0.50	+0.2
4,007,850	-		BPHYT_RS17750	0.50	+1.5
4,007,850	-		BPHYT_RS17750	0.50	-0.4
4,007,912	+		BPHYT_RS17750	0.56	+1.6
4,007,913	-		BPHYT_RS17750	0.56	+0.5
4,008,098	+		BPHYT_RS17750	0.74	+1.7
4,008,098	+		BPHYT_RS17750	0.74	+0.8
4,008,098	+		BPHYT_RS17750	0.74	+2.1
4,008,099	-		BPHYT_RS17750	0.74	+1.2
4,008,099	-		BPHYT_RS17750	0.74	+1.6
4,008,099	-		BPHYT_RS17750	0.74	+1.6
4,008,167	+		BPHYT_RS17750	0.81	+1.8
4,008,168	-		BPHYT_RS17750	0.81	+1.7
4,008,168	-		BPHYT_RS17750	0.81	+1.8
4,008,194	+		BPHYT_RS17750	0.84	+1.1
4,008,280	-				+2.0
4,008,365	-				+0.7
4,008,365	-				+0.1
4,008,602	-		BPHYT_RS17755	0.41	+1.6
4,008,602	-		BPHYT_RS17755	0.41	+2.1
4,008,661	+		BPHYT_RS17755	0.52	+1.1
4,008,697	+		BPHYT_RS17755	0.58	+2.3
4,008,697	+		BPHYT_RS17755	0.58	+1.5
4,008,698	-		BPHYT_RS17755	0.58	+2.0
4,008,698	-		BPHYT_RS17755	0.58	+1.6
4,008,698	-		BPHYT_RS17755	0.58	+1.2
4,008,785	+		BPHYT_RS17755	0.74	+2.3
4,009,025	+				+2.0
4,009,026	-				+0.9
4,009,026	-				+1.0
4,009,026	-				+2.1
4,009,082	+				+2.6
4,009,292	+		BPHYT_RS17760	0.35	+1.4
4,009,292	+		BPHYT_RS17760	0.35	+1.8