Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17685

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
3,995,536	+				-1.3
3,995,666	+		BPHYT_RS17680	0.25	+0.3
3,995,881	+		BPHYT_RS17680	0.53	-1.0
3,995,882	-		BPHYT_RS17680	0.53	-0.7
3,995,882	-		BPHYT_RS17680	0.53	+0.6
3,996,230	+				+1.1
3,996,230	+				-0.5
3,996,235	-				-0.2
3,996,235	-				-1.2
3,996,482	-				+1.3
3,996,482	-				+0.4
3,996,733	+		BPHYT_RS17685	0.34	+1.5
3,996,754	+		BPHYT_RS17685	0.36	-0.6
3,996,755	-		BPHYT_RS17685	0.37	+1.0
3,996,857	+		BPHYT_RS17685	0.50	-2.8
3,996,857	+		BPHYT_RS17685	0.50	+1.3
3,996,932	-		BPHYT_RS17685	0.60	-0.7
3,996,932	-		BPHYT_RS17685	0.60	-0.1
3,996,932	-		BPHYT_RS17685	0.60	+0.2
3,996,952	+		BPHYT_RS17685	0.63	-1.2
3,996,953	-		BPHYT_RS17685	0.63	-1.5
3,997,188	+				-0.2
3,997,188	+				-0.3
3,997,188	+				+3.1
3,997,189	-				-0.4
3,997,232	+				-2.1
3,997,232	+				-0.8
3,997,233	-				-0.0
3,997,233	-				-0.4
3,997,233	-				+0.4
3,997,233	-				+0.4
3,997,233	-				-0.9
3,997,334	-				-0.0
3,997,337	-				-0.1
3,997,337	-				+0.2
3,997,387	+				-1.1
3,997,387	+				-0.0
3,997,388	-				-1.7
3,997,410	+				+0.5
3,997,411	-				+1.3
3,997,411	-				+0.1
3,997,411	-				-0.5
3,997,548	+		BPHYT_RS17690	0.13	+0.4
3,997,583	+		BPHYT_RS17690	0.19	+0.2
3,997,583	+		BPHYT_RS17690	0.19	+0.5
3,997,583	+		BPHYT_RS17690	0.19	+0.4
3,997,583	+		BPHYT_RS17690	0.19	-1.4
3,997,628	+		BPHYT_RS17690	0.26	-1.2
3,997,628	+		BPHYT_RS17690	0.26	+0.5
3,997,628	+		BPHYT_RS17690	0.26	+0.3
3,997,628	+		BPHYT_RS17690	0.26	+0.2
3,997,629	-		BPHYT_RS17690	0.26	-0.5
3,997,629	-		BPHYT_RS17690	0.26	-1.3
3,997,629	-		BPHYT_RS17690	0.26	+0.0
3,997,631	+		BPHYT_RS17690	0.26	+0.2
3,997,632	-		BPHYT_RS17690	0.26	+1.3
3,997,646	+		BPHYT_RS17690	0.29	+0.5
3,998,112	-				+0.5
3,998,199	-		BPHYT_RS17695	0.16	+0.4
3,998,199	-		BPHYT_RS17695	0.16	+0.5