Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS16080 and BPHYT_RS16085 are separated by 90 nucleotides BPHYT_RS16085 and BPHYT_RS16090 are separated by 25 nucleotides BPHYT_RS16090 and BPHYT_RS16095 are separated by 57 nucleotides
BPHYT_RS16080: BPHYT_RS16080 - xylulokinase, at 3,649,109 to 3,650,590
_RS16080
BPHYT_RS16085: BPHYT_RS16085 - DeoR faimly transcriptional regulator, at 3,650,681 to 3,651,628
_RS16085
BPHYT_RS16090: BPHYT_RS16090 - hypothetical protein, at 3,651,654 to 3,651,950
_RS16090
BPHYT_RS16095: BPHYT_RS16095 - ABC transporter for D-Sorbitol, ATPase component (from data) , at 3,652,008 to 3,653,117
_RS16095
Position (kb)
3650
3651
3652 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3649.693 kb on + strand, within BPHYT_RS16080 at 3649.693 kb on + strand, within BPHYT_RS16080 at 3649.694 kb on - strand, within BPHYT_RS16080 at 3649.694 kb on - strand, within BPHYT_RS16080 at 3649.694 kb on - strand, within BPHYT_RS16080 at 3650.650 kb on - strand at 3650.733 kb on - strand at 3650.735 kb on + strand at 3650.735 kb on + strand at 3650.736 kb on - strand at 3650.941 kb on + strand, within BPHYT_RS16085 at 3651.150 kb on - strand, within BPHYT_RS16085 at 3651.150 kb on - strand, within BPHYT_RS16085 at 3651.361 kb on + strand, within BPHYT_RS16085 at 3651.656 kb on - strand at 3651.766 kb on + strand, within BPHYT_RS16090 at 3651.767 kb on - strand, within BPHYT_RS16090 at 3651.941 kb on - strand at 3652.034 kb on + strand at 3652.116 kb on - strand at 3652.116 kb on - strand at 3652.116 kb on - strand at 3652.183 kb on + strand, within BPHYT_RS16095 at 3652.553 kb on - strand, within BPHYT_RS16095
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 3,649,693 + BPHYT_RS16080 0.39 +0.4 3,649,693 + BPHYT_RS16080 0.39 +1.5 3,649,694 - BPHYT_RS16080 0.39 +0.7 3,649,694 - BPHYT_RS16080 0.39 -0.1 3,649,694 - BPHYT_RS16080 0.39 +0.2 3,650,650 - -0.5 3,650,733 - -0.6 3,650,735 + +0.7 3,650,735 + -3.4 3,650,736 - -0.4 3,650,941 + BPHYT_RS16085 0.27 -2.3 3,651,150 - BPHYT_RS16085 0.49 -0.4 3,651,150 - BPHYT_RS16085 0.49 -2.2 3,651,361 + BPHYT_RS16085 0.72 -0.9 3,651,656 - -0.3 3,651,766 + BPHYT_RS16090 0.38 -0.4 3,651,767 - BPHYT_RS16090 0.38 +0.7 3,651,941 - +0.2 3,652,034 + +0.9 3,652,116 - -2.0 3,652,116 - -0.6 3,652,116 - +0.1 3,652,183 + BPHYT_RS16095 0.16 +0.2 3,652,553 - BPHYT_RS16095 0.49 -0.9
Or see this region's nucleotide sequence