Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13320

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS13315 and BPHYT_RS13320 are separated by 135 nucleotidesBPHYT_RS13320 and BPHYT_RS13325 are separated by 341 nucleotides BPHYT_RS13315: BPHYT_RS13315 - dihydropyrimidine dehydrogenase subunit A, at 3,040,215 to 3,041,564 _RS13315 BPHYT_RS13320: BPHYT_RS13320 - allantoate amidohydrolase, at 3,041,700 to 3,042,980 _RS13320 BPHYT_RS13325: BPHYT_RS13325 - TetR family transcriptional regulator, at 3,043,322 to 3,044,032 _RS13325 Position (kb) 3041 3042 3043Strain fitness (log2 ratio) -2 -1 0 1 2at 3040.776 kb on + strand, within BPHYT_RS13315at 3041.330 kb on + strand, within BPHYT_RS13315at 3041.434 kb on + strandat 3041.745 kb on + strandat 3041.746 kb on - strandat 3041.857 kb on + strand, within BPHYT_RS13320at 3043.850 kb on - strand, within BPHYT_RS13325at 3043.875 kb on - strand, within BPHYT_RS13325

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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3,040,776 + BPHYT_RS13315 0.42 -0.5
3,041,330 + BPHYT_RS13315 0.83 -1.0
3,041,434 + -0.3
3,041,745 + -0.5
3,041,746 - +1.9
3,041,857 + BPHYT_RS13320 0.12 -1.8
3,043,850 - BPHYT_RS13325 0.74 +0.4
3,043,875 - BPHYT_RS13325 0.78 -1.6

Or see this region's nucleotide sequence