Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11235

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
2,555,003	+				+0.2
2,555,036	+				+1.1
2,555,037	-				+0.0
2,555,042	-				+0.4
2,555,046	-				+1.5
2,555,094	+				-0.2
2,555,102	-				-0.3
2,555,130	-				-0.0
2,555,178	-				+0.2
2,555,186	+				-1.8
2,555,186	+				+0.0
2,555,206	-				-0.1
2,555,362	-		BPHYT_RS11230	0.33	+0.2
2,555,598	-		BPHYT_RS11230	0.83	+0.4
2,555,820	+				-2.0
2,555,821	-				-0.2
2,555,957	+		BPHYT_RS11235	0.60	+2.3
2,556,050	+				-1.2
2,556,051	-				+1.5
2,556,051	-				-1.5
2,556,585	+		BPHYT_RS11245	0.60	-1.4
2,556,762	-		BPHYT_RS11245	0.89	-1.2
2,556,762	-		BPHYT_RS11245	0.89	-0.1
2,556,851	-				-0.1
2,557,022	-				-0.6
2,557,022	-				-0.2
2,557,022	-				+0.2