Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10135
Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | P. phyto PHYTO2 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,306,478 | - | -0.3 | |||
2,306,478 | - | +0.6 | |||
2,306,702 | - | -1.4 | |||
2,306,846 | + | +0.2 | |||
2,307,012 | + | +0.5 | |||
2,307,031 | - | -1.6 | |||
2,307,119 | + | BPHYT_RS10130 | 0.26 | +0.8 | |
2,307,247 | - | +0.9 | |||
2,307,520 | + | BPHYT_RS10135 | 0.54 | -2.1 | |
2,307,742 | - | +1.1 | |||
2,307,795 | - | -0.2 | |||
2,307,795 | - | -0.2 | |||
2,307,796 | + | -1.0 | |||
2,307,796 | + | -1.0 | |||
2,307,796 | + | +1.1 | |||
2,307,797 | - | -0.0 | |||
2,307,935 | - | +0.5 | |||
2,307,974 | - | +1.0 | |||
2,308,267 | + | BPHYT_RS10140 | 0.44 | -0.8 | |
2,308,268 | - | BPHYT_RS10140 | 0.44 | +1.4 | |
2,308,268 | - | BPHYT_RS10140 | 0.44 | +1.2 |
Or see this region's nucleotide sequence