Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10135

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
2,306,478	-				-0.3
2,306,478	-				+0.6
2,306,702	-				-1.4
2,306,846	+				+0.2
2,307,012	+				+0.5
2,307,031	-				-1.6
2,307,119	+		BPHYT_RS10130	0.26	+0.8
2,307,247	-				+0.9
2,307,520	+		BPHYT_RS10135	0.54	-2.1
2,307,742	-				+1.1
2,307,795	-				-0.2
2,307,795	-				-0.2
2,307,796	+				-1.0
2,307,796	+				-1.0
2,307,796	+				+1.1
2,307,797	-				-0.0
2,307,935	-				+0.5
2,307,974	-				+1.0
2,308,267	+		BPHYT_RS10140	0.44	-0.8
2,308,268	-		BPHYT_RS10140	0.44	+1.4
2,308,268	-		BPHYT_RS10140	0.44	+1.2