Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08950

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
2,024,899	-				+2.5
2,024,899	-				+1.5
2,025,084	+		BPHYT_RS08945	0.15	+0.4
2,025,084	+		BPHYT_RS08945	0.15	-0.7
2,025,084	+		BPHYT_RS08945	0.15	-0.4
2,025,085	-		BPHYT_RS08945	0.16	+1.4
2,025,088	+		BPHYT_RS08945	0.17	-0.9
2,025,089	-		BPHYT_RS08945	0.17	+2.0
2,025,339	+		BPHYT_RS08945	0.83	+0.4
2,025,340	-		BPHYT_RS08945	0.84	+0.0
2,025,392	+				-0.3
2,025,392	+				+0.4
2,025,393	-				+0.1
2,025,581	+				-0.7
2,025,582	-				-0.3
2,025,857	+				+1.4
2,025,858	-				-0.8
2,025,858	-				+1.1
2,026,064	+		BPHYT_RS08950	0.21	+0.1
2,026,065	-		BPHYT_RS08950	0.21	-0.8
2,026,065	-		BPHYT_RS08950	0.21	+1.1
2,026,109	+		BPHYT_RS08950	0.24	-0.1
2,026,109	+		BPHYT_RS08950	0.24	-0.0
2,026,109	+		BPHYT_RS08950	0.24	-0.4
2,026,110	-		BPHYT_RS08950	0.24	+0.7
2,026,110	-		BPHYT_RS08950	0.24	-0.1
2,026,110	-		BPHYT_RS08950	0.24	+0.2
2,026,251	-		BPHYT_RS08950	0.36	-1.6
2,026,251	-		BPHYT_RS08950	0.36	-0.4
2,026,251	-		BPHYT_RS08950	0.36	+0.1
2,026,252	+				+1.7
2,026,271	-		BPHYT_RS08950	0.37	-2.8
2,026,367	+		BPHYT_RS08950	0.45	+0.9
2,026,442	+		BPHYT_RS08950	0.51	-1.4
2,026,457	+		BPHYT_RS08950	0.52	+0.1
2,026,619	+		BPHYT_RS08950	0.65	-0.2
2,026,770	-		BPHYT_RS08950	0.77	+0.1
2,026,826	+		BPHYT_RS08950	0.82	-1.2
2,026,826	+		BPHYT_RS08950	0.82	+0.7
2,026,826	+		BPHYT_RS08950	0.82	+0.8
2,026,827	-		BPHYT_RS08950	0.82	-0.7
2,026,827	-		BPHYT_RS08950	0.82	-1.3
2,026,827	-		BPHYT_RS08950	0.82	+1.2
2,026,828	+		BPHYT_RS08950	0.82	-2.0
2,026,828	+		BPHYT_RS08950	0.82	+1.3
2,026,828	+		BPHYT_RS08950	0.82	+0.2
2,026,828	+		BPHYT_RS08950	0.82	-1.3
2,026,896	+		BPHYT_RS08950	0.87	+1.4
2,027,064	+				+0.4
2,027,072	-				-0.3
2,027,127	+				-0.9
2,027,135	+				-0.3
2,027,216	+				-1.4
2,027,654	-		BPHYT_RS08955	0.37	-2.2
2,027,834	-		BPHYT_RS08955	0.51	+0.0
2,027,875	+		BPHYT_RS08955	0.54	-1.8
2,028,050	-		BPHYT_RS08955	0.67	+1.1