Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08165
Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | P. phyto PHYTO2 MOI 1 |
---|---|---|---|---|---|
remove | |||||
1,866,390 | - | BPHYT_RS08155 | 0.28 | -1.7 | |
1,866,517 | - | -1.0 | |||
1,866,530 | + | +0.1 | |||
1,866,583 | + | -1.0 | |||
1,866,684 | + | -0.4 | |||
1,866,736 | + | BPHYT_RS08160 | 0.15 | -2.3 | |
1,866,736 | + | BPHYT_RS08160 | 0.15 | -1.8 | |
1,866,736 | + | BPHYT_RS08160 | 0.15 | +0.0 | |
1,866,737 | - | BPHYT_RS08160 | 0.16 | -1.0 | |
1,866,737 | - | BPHYT_RS08160 | 0.16 | -2.5 | |
1,866,737 | - | BPHYT_RS08160 | 0.16 | -1.5 | |
1,866,737 | - | BPHYT_RS08160 | 0.16 | -1.4 | |
1,867,010 | - | BPHYT_RS08160 | 0.70 | +0.8 | |
1,867,010 | - | BPHYT_RS08160 | 0.70 | +0.2 | |
1,867,540 | + | BPHYT_RS08165 | 0.77 | -3.2 | |
1,868,606 | - | BPHYT_RS08170 | 0.90 | -0.5 | |
1,868,647 | + | -0.5 | |||
1,868,648 | - | +0.2 | |||
1,868,648 | - | -0.6 | |||
1,868,648 | - | +1.7 |
Or see this region's nucleotide sequence