Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08135

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
1,858,962	-		BPHYT_RS08125	0.85	-1.8
1,858,962	-		BPHYT_RS08125	0.85	+0.7
1,858,962	-		BPHYT_RS08125	0.85	-3.5
1,859,015	+		BPHYT_RS08125	0.89	-3.0
1,859,096	-				+0.1
1,859,116	+				+0.8
1,859,116	+				+0.1
1,859,233	+				+0.7
1,859,234	-				-0.9
1,859,234	-				+0.8
1,859,235	+				-0.2
1,859,236	-				+0.9
1,859,275	+				-1.4
1,859,434	-		BPHYT_RS08130	0.32	-0.3
1,859,435	+		BPHYT_RS08130	0.32	+2.0
1,859,601	-		BPHYT_RS08130	0.69	+0.4
1,859,766	+				+0.1
1,859,767	-				+0.5
1,859,905	+		BPHYT_RS08135	0.11	+1.9
1,859,960	-		BPHYT_RS08135	0.22	+1.0
1,860,355	+				+1.9
1,860,356	-				-1.3
1,860,532	+				-0.2
1,860,532	+				+1.1
1,860,532	+				+0.0
1,860,609	+				+1.0
1,860,638	-				+0.4
1,860,702	+				+2.1
1,860,702	+				-0.3
1,860,777	+		BPHYT_RS08140	0.11	-0.1
1,860,804	+		BPHYT_RS08140	0.12	-0.3
1,860,804	+		BPHYT_RS08140	0.12	+2.1
1,860,805	-		BPHYT_RS08140	0.12	-1.3
1,860,805	-		BPHYT_RS08140	0.12	-0.5
1,860,805	-		BPHYT_RS08140	0.12	+0.7
1,860,805	-		BPHYT_RS08140	0.12	+0.1
1,860,825	+		BPHYT_RS08140	0.13	-1.4
1,860,826	-		BPHYT_RS08140	0.13	+0.4
1,861,260	+		BPHYT_RS08140	0.39	-1.4
1,861,260	+		BPHYT_RS08140	0.39	-0.6
1,861,322	+		BPHYT_RS08140	0.42	-0.5