Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07120

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07115 and BPHYT_RS07120 are separated by 986 nucleotidesBPHYT_RS07120 and BPHYT_RS07125 are separated by 76 nucleotidesBPHYT_RS07125 and BPHYT_RS07130 are separated by 12 nucleotides BPHYT_RS07115: BPHYT_RS07115 - excinuclease ABC subunit A, at 1,608,635 to 1,614,586 _RS07115 BPHYT_RS07120: BPHYT_RS07120 - biopolymer transporter TonB, at 1,615,573 to 1,616,280 _RS07120 BPHYT_RS07125: BPHYT_RS07125 - biopolymer transporter ExbB, at 1,616,357 to 1,617,262 _RS07125 BPHYT_RS07130: BPHYT_RS07130 - biopolymer transporter ExbD, at 1,617,275 to 1,617,697 _RS07130 Position (kb) 1615 1616 1617Strain fitness (log2 ratio) -1 0 1 2 3at 1615.119 kb on + strandat 1615.289 kb on - strandat 1616.010 kb on + strand, within BPHYT_RS07120at 1616.338 kb on + strandat 1616.576 kb on + strand, within BPHYT_RS07125

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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1,615,119 + +1.3
1,615,289 - +0.6
1,616,010 + BPHYT_RS07120 0.62 +2.9
1,616,338 + -0.8
1,616,576 + BPHYT_RS07125 0.24 +0.5

Or see this region's nucleotide sequence