Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07055 and BPHYT_RS07060 are separated by 109 nucleotides BPHYT_RS07060 and BPHYT_RS07065 are separated by 48 nucleotides BPHYT_RS07065 and BPHYT_RS07070 are separated by 162 nucleotides
BPHYT_RS07055: BPHYT_RS07055 - sulfotransferase, at 1,595,113 to 1,596,837
_RS07055
BPHYT_RS07060: BPHYT_RS07060 - aldo/keto reductase, at 1,596,947 to 1,597,972
_RS07060
BPHYT_RS07065: BPHYT_RS07065 - 3-ketoacyl-ACP reductase, at 1,598,021 to 1,598,764
_RS07065
BPHYT_RS07070: BPHYT_RS07070 - transcriptional regulator, at 1,598,927 to 1,599,838
_RS07070
Position (kb) 1596
1597
1598 Strain fitness (log2 ratio) -2
-1
0
1 at 1596.277 kb on + strand, within BPHYT_RS07055 at 1596.544 kb on + strand, within BPHYT_RS07055 at 1596.714 kb on + strand at 1596.715 kb on - strand at 1596.901 kb on - strand at 1597.130 kb on + strand, within BPHYT_RS07060 at 1597.307 kb on + strand, within BPHYT_RS07060 at 1597.401 kb on + strand, within BPHYT_RS07060 at 1597.503 kb on - strand, within BPHYT_RS07060 at 1597.658 kb on - strand, within BPHYT_RS07060 at 1598.132 kb on + strand, within BPHYT_RS07065 at 1598.132 kb on + strand, within BPHYT_RS07065 at 1598.132 kb on + strand, within BPHYT_RS07065 at 1598.310 kb on + strand, within BPHYT_RS07065 at 1598.336 kb on - strand, within BPHYT_RS07065 at 1598.439 kb on + strand, within BPHYT_RS07065 at 1598.439 kb on + strand, within BPHYT_RS07065 at 1598.653 kb on - strand, within BPHYT_RS07065 at 1598.653 kb on - strand, within BPHYT_RS07065
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 1,596,277 + BPHYT_RS07055 0.67 -1.6 1,596,544 + BPHYT_RS07055 0.83 +0.9 1,596,714 + -0.4 1,596,715 - -1.8 1,596,901 - +0.6 1,597,130 + BPHYT_RS07060 0.18 -0.1 1,597,307 + BPHYT_RS07060 0.35 +1.5 1,597,401 + BPHYT_RS07060 0.44 -0.3 1,597,503 - BPHYT_RS07060 0.54 +0.7 1,597,658 - BPHYT_RS07060 0.69 +1.0 1,598,132 + BPHYT_RS07065 0.15 +1.1 1,598,132 + BPHYT_RS07065 0.15 +1.5 1,598,132 + BPHYT_RS07065 0.15 -0.1 1,598,310 + BPHYT_RS07065 0.39 -1.4 1,598,336 - BPHYT_RS07065 0.42 +0.3 1,598,439 + BPHYT_RS07065 0.56 +1.3 1,598,439 + BPHYT_RS07065 0.56 -0.5 1,598,653 - BPHYT_RS07065 0.85 -0.2 1,598,653 - BPHYT_RS07065 0.85 +1.2
Or see this region's nucleotide sequence