Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05975

Experiment: P. phyto PHYTO2 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05970 and BPHYT_RS05975 are separated by 277 nucleotidesBPHYT_RS05975 and BPHYT_RS05980 are separated by 171 nucleotides BPHYT_RS05970: BPHYT_RS05970 - glyoxalase, at 1,358,315 to 1,359,016 _RS05970 BPHYT_RS05975: BPHYT_RS05975 - GntR family transcriptional regulator, at 1,359,294 to 1,360,754 _RS05975 BPHYT_RS05980: BPHYT_RS05980 - heat shock protein 90, at 1,360,926 to 1,362,824 _RS05980 Position (kb) 1359 1360 1361Strain fitness (log2 ratio) -2 -1 0 1 2at 1358.316 kb on + strandat 1358.320 kb on + strandat 1358.330 kb on + strandat 1358.718 kb on + strand, within BPHYT_RS05970at 1358.850 kb on + strand, within BPHYT_RS05970at 1358.851 kb on - strand, within BPHYT_RS05970at 1358.881 kb on + strand, within BPHYT_RS05970at 1358.947 kb on - strandat 1359.107 kb on + strandat 1359.201 kb on + strandat 1359.201 kb on + strandat 1359.202 kb on - strandat 1359.211 kb on + strandat 1359.211 kb on + strandat 1359.253 kb on + strandat 1359.277 kb on + strandat 1359.534 kb on + strand, within BPHYT_RS05975at 1359.534 kb on + strand, within BPHYT_RS05975at 1359.535 kb on - strand, within BPHYT_RS05975at 1359.535 kb on - strand, within BPHYT_RS05975at 1359.915 kb on + strand, within BPHYT_RS05975at 1360.014 kb on + strand, within BPHYT_RS05975at 1360.193 kb on + strand, within BPHYT_RS05975at 1360.193 kb on + strand, within BPHYT_RS05975at 1360.676 kb on + strandat 1361.682 kb on + strand, within BPHYT_RS05980at 1361.730 kb on - strand, within BPHYT_RS05980

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Per-strain Table

Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1
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1,358,316 + +2.6
1,358,320 + +0.5
1,358,330 + +0.0
1,358,718 + BPHYT_RS05970 0.57 -0.5
1,358,850 + BPHYT_RS05970 0.76 +0.8
1,358,851 - BPHYT_RS05970 0.76 -1.0
1,358,881 + BPHYT_RS05970 0.81 +0.6
1,358,947 - +1.4
1,359,107 + +0.5
1,359,201 + +0.3
1,359,201 + -0.0
1,359,202 - +0.1
1,359,211 + +1.2
1,359,211 + -0.4
1,359,253 + -0.7
1,359,277 + -0.7
1,359,534 + BPHYT_RS05975 0.16 +0.5
1,359,534 + BPHYT_RS05975 0.16 -0.0
1,359,535 - BPHYT_RS05975 0.16 +0.2
1,359,535 - BPHYT_RS05975 0.16 -1.0
1,359,915 + BPHYT_RS05975 0.43 -0.7
1,360,014 + BPHYT_RS05975 0.49 -2.6
1,360,193 + BPHYT_RS05975 0.62 -0.9
1,360,193 + BPHYT_RS05975 0.62 -0.9
1,360,676 + -1.1
1,361,682 + BPHYT_RS05980 0.40 +0.1
1,361,730 - BPHYT_RS05980 0.42 -2.2

Or see this region's nucleotide sequence