Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04965

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
1,142,259	+		BPHYT_RS04960	0.24	-0.6
1,142,304	+		BPHYT_RS04960	0.30	-0.5
1,142,304	+		BPHYT_RS04960	0.30	-0.9
1,142,323	+		BPHYT_RS04960	0.33	+0.3
1,142,324	-		BPHYT_RS04960	0.33	-0.7
1,142,421	+		BPHYT_RS04960	0.48	+1.6
1,142,421	+		BPHYT_RS04960	0.48	-2.8
1,142,551	-		BPHYT_RS04960	0.68	-0.1
1,142,812	-				-1.3
1,142,812	-				-0.4
1,142,812	-				-0.1
1,142,817	+				-1.4
1,142,817	+				+0.0
1,142,818	-				-0.7
1,142,818	-				-0.7
1,142,839	+				-1.3
1,142,840	-				+0.1
1,142,864	+				-2.4
1,142,865	-				+0.8
1,142,871	+				+0.0
1,142,871	+				-1.0
1,142,900	-				+0.2
1,142,937	+				+0.3
1,142,938	-				-0.6
1,142,942	+				-0.1
1,142,943	-				-0.7
1,143,240	+		BPHYT_RS04965	0.12	-1.8
1,143,241	-		BPHYT_RS04965	0.12	-3.3
1,143,499	+		BPHYT_RS04965	0.36	-0.3
1,143,518	+		BPHYT_RS04965	0.38	-0.9
1,143,518	+		BPHYT_RS04965	0.38	-1.8
1,143,519	-		BPHYT_RS04965	0.38	-2.8
1,143,919	+		BPHYT_RS04965	0.75	-2.2
1,143,919	+		BPHYT_RS04965	0.75	-3.4
1,143,919	+		BPHYT_RS04965	0.75	-0.7
1,143,920	-		BPHYT_RS04965	0.75	-1.9
1,143,920	-		BPHYT_RS04965	0.75	-2.7
1,143,920	-		BPHYT_RS04965	0.75	-2.7
1,143,920	-		BPHYT_RS04965	0.75	-0.6
1,143,949	+		BPHYT_RS04965	0.77	-1.5
1,143,949	+		BPHYT_RS04965	0.77	-1.0
1,143,950	-		BPHYT_RS04965	0.77	-1.4
1,144,175	-				-0.5
1,144,208	+				-0.1
1,144,209	-				-0.5
1,144,489	+		BPHYT_RS04970	0.13	+0.1
1,144,490	-		BPHYT_RS04970	0.13	+0.3
1,144,618	-		BPHYT_RS04970	0.37	-0.4
1,144,644	-		BPHYT_RS04970	0.42	+0.0
1,145,009	+				-1.5
1,145,010	-				+1.6
1,145,049	+				+0.7