Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04950

Experiment: P. phyto PHYTO2 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. phyto PHYTO2 MOI 1
1,134,203	+		BPHYT_RS04945	0.49	+0.6
1,134,204	-		BPHYT_RS04945	0.49	+1.4
1,134,204	-		BPHYT_RS04945	0.49	+0.3
1,134,204	-		BPHYT_RS04945	0.49	+1.6
1,134,210	-		BPHYT_RS04945	0.50	+1.0
1,134,210	-				+1.0
1,134,210	-		BPHYT_RS04945	0.50	+1.2
1,134,210	-		BPHYT_RS04945	0.50	+0.6
1,134,236	+				-1.4
1,134,272	+		BPHYT_RS04945	0.53	+1.5
1,134,272	+		BPHYT_RS04945	0.53	-1.1
1,134,272	+		BPHYT_RS04945	0.53	+2.0
1,134,272	+		BPHYT_RS04945	0.53	+1.1
1,134,272	+		BPHYT_RS04945	0.53	+1.4
1,134,272	+		BPHYT_RS04945	0.53	+0.4
1,134,279	-		BPHYT_RS04945	0.53	+0.8
1,134,394	+		BPHYT_RS04945	0.60	+0.4
1,134,394	+		BPHYT_RS04945	0.60	+1.6
1,134,394	+		BPHYT_RS04945	0.60	+1.2
1,134,395	-		BPHYT_RS04945	0.60	+0.2
1,134,395	-		BPHYT_RS04945	0.60	+1.5
1,134,410	+		BPHYT_RS04945	0.60	+0.4
1,134,410	+		BPHYT_RS04945	0.60	+0.4
1,134,410	+		BPHYT_RS04945	0.60	+0.3
1,134,439	+		BPHYT_RS04945	0.62	+0.3
1,134,439	+		BPHYT_RS04945	0.62	+0.6
1,134,439	+		BPHYT_RS04945	0.62	+1.1
1,134,440	-		BPHYT_RS04945	0.62	+0.8
1,134,443	+		BPHYT_RS04945	0.62	+1.9
1,134,443	+		BPHYT_RS04945	0.62	+1.0
1,134,443	+		BPHYT_RS04945	0.62	+1.7
1,134,444	-		BPHYT_RS04945	0.62	+1.7
1,134,444	-		BPHYT_RS04945	0.62	+2.4
1,134,495	-		BPHYT_RS04945	0.65	-0.2
1,134,495	-		BPHYT_RS04945	0.65	+0.4
1,134,500	+		BPHYT_RS04945	0.65	+0.4
1,134,500	+		BPHYT_RS04945	0.65	+1.3
1,134,512	+		BPHYT_RS04945	0.66	+1.4
1,134,512	+		BPHYT_RS04945	0.66	+1.0
1,134,512	+		BPHYT_RS04945	0.66	+0.8
1,134,512	+		BPHYT_RS04945	0.66	+0.7
1,134,512	+		BPHYT_RS04945	0.66	+1.5
1,134,516	-		BPHYT_RS04945	0.66	+1.4
1,134,598	+		BPHYT_RS04945	0.71	+0.6
1,134,599	-		BPHYT_RS04945	0.71	+1.2
1,134,699	-		BPHYT_RS04945	0.76	+0.3
1,134,716	+		BPHYT_RS04945	0.77	+2.6
1,134,717	-		BPHYT_RS04945	0.77	+0.4
1,134,863	-		BPHYT_RS04945	0.85	+0.5
1,134,868	+		BPHYT_RS04945	0.85	+1.5
1,134,869	-		BPHYT_RS04945	0.85	+0.8
1,134,869	-		BPHYT_RS04945	0.85	-1.1
1,134,902	+		BPHYT_RS04945	0.87	+0.6
1,134,902	+		BPHYT_RS04945	0.87	+1.4
1,134,902	+		BPHYT_RS04945	0.87	+0.9
1,134,902	+		BPHYT_RS04945	0.87	+1.8
1,134,902	+		BPHYT_RS04945	0.87	+2.0
1,134,903	-		BPHYT_RS04945	0.87	+0.9
1,134,903	-		BPHYT_RS04945	0.87	+1.8
1,134,927	-		BPHYT_RS04945	0.89	-0.2
1,135,014	-				-1.3
1,135,079	+				+0.8
1,135,109	+				+1.9
1,135,110	-				+0.3
1,135,211	+				+0.6
1,135,342	-				+0.3
1,135,342	-				-0.0
1,135,468	+				+0.7
1,135,469	-				+1.7
1,135,469	-				+1.3
1,135,469	-				+0.7
1,135,569	+				+1.8
1,135,570	-				+2.6
1,135,570	-				+1.4
1,135,799	+		BPHYT_RS04950	0.15	+0.5
1,136,001	-		BPHYT_RS04950	0.19	+1.0
1,136,444	+		BPHYT_RS04950	0.30	+1.2
1,136,733	+		BPHYT_RS04950	0.36	+0.4
1,136,733	+		BPHYT_RS04950	0.36	+0.6
1,136,733	+		BPHYT_RS04950	0.36	+1.7
1,136,734	-		BPHYT_RS04950	0.36	+0.7
1,137,227	+		BPHYT_RS04950	0.48	+0.8
1,137,227	+		BPHYT_RS04950	0.48	+0.5
1,137,228	-		BPHYT_RS04950	0.48	+0.2
1,137,228	-		BPHYT_RS04950	0.48	+1.0
1,137,369	+		BPHYT_RS04950	0.51	+2.0
1,137,370	-		BPHYT_RS04950	0.51	+0.7
1,137,370	-		BPHYT_RS04950	0.51	+1.3
1,138,254	+		BPHYT_RS04950	0.71	+1.6
1,138,254	+		BPHYT_RS04950	0.71	+1.5
1,138,255	-		BPHYT_RS04950	0.71	+2.1
1,138,480	+		BPHYT_RS04950	0.77	+1.5
1,138,680	-		BPHYT_RS04950	0.81	+1.5
1,138,935	+				+1.9
1,138,935	+		BPHYT_RS04950	0.87	-0.0
1,139,015	+		BPHYT_RS04950	0.89	+0.7
1,139,015	+		BPHYT_RS04950	0.89	-0.2
1,139,015	+		BPHYT_RS04950	0.89	+0.8
1,139,016	-		BPHYT_RS04950	0.89	+0.8
1,139,849	-		BPHYT_RS04955	0.11	-1.2