Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04295 and BPHYT_RS04300 are separated by 56 nucleotides BPHYT_RS04300 and BPHYT_RS04305 are separated by 89 nucleotides
BPHYT_RS04295: BPHYT_RS04295 - ABC transporter, at 984,140 to 984,928
_RS04295
BPHYT_RS04300: BPHYT_RS04300 - family 2 glycosyl transferase, at 984,985 to 987,438
_RS04300
BPHYT_RS04305: BPHYT_RS04305 - hypothetical protein, at 987,528 to 989,003
_RS04305
Position (kb) 984
985
986
987
988 Strain fitness (log2 ratio) -1
0
1
2
3 at 984.273 kb on - strand, within BPHYT_RS04295 at 984.286 kb on + strand, within BPHYT_RS04295 at 984.324 kb on + strand, within BPHYT_RS04295 at 984.371 kb on + strand, within BPHYT_RS04295 at 984.371 kb on + strand, within BPHYT_RS04295 at 984.371 kb on + strand, within BPHYT_RS04295 at 984.372 kb on - strand, within BPHYT_RS04295 at 984.372 kb on - strand, within BPHYT_RS04295 at 984.478 kb on + strand, within BPHYT_RS04295 at 984.478 kb on + strand, within BPHYT_RS04295 at 984.479 kb on - strand, within BPHYT_RS04295 at 984.623 kb on + strand, within BPHYT_RS04295 at 984.647 kb on + strand, within BPHYT_RS04295 at 984.698 kb on + strand, within BPHYT_RS04295 at 984.698 kb on + strand, within BPHYT_RS04295 at 984.699 kb on - strand, within BPHYT_RS04295 at 984.841 kb on + strand, within BPHYT_RS04295 at 984.841 kb on + strand, within BPHYT_RS04295 at 985.236 kb on + strand, within BPHYT_RS04300 at 985.236 kb on + strand, within BPHYT_RS04300 at 985.237 kb on - strand, within BPHYT_RS04300 at 985.281 kb on + strand, within BPHYT_RS04300 at 985.282 kb on - strand, within BPHYT_RS04300 at 985.282 kb on - strand, within BPHYT_RS04300 at 985.282 kb on - strand, within BPHYT_RS04300 at 985.330 kb on + strand, within BPHYT_RS04300 at 985.537 kb on + strand, within BPHYT_RS04300 at 985.537 kb on + strand, within BPHYT_RS04300 at 985.538 kb on - strand, within BPHYT_RS04300 at 985.540 kb on + strand, within BPHYT_RS04300 at 985.679 kb on + strand, within BPHYT_RS04300 at 985.679 kb on + strand, within BPHYT_RS04300 at 985.681 kb on + strand, within BPHYT_RS04300 at 985.681 kb on + strand, within BPHYT_RS04300 at 985.681 kb on + strand, within BPHYT_RS04300 at 985.682 kb on - strand, within BPHYT_RS04300 at 985.682 kb on - strand, within BPHYT_RS04300 at 985.683 kb on + strand, within BPHYT_RS04300 at 985.683 kb on + strand, within BPHYT_RS04300 at 985.683 kb on + strand, within BPHYT_RS04300 at 985.684 kb on - strand, within BPHYT_RS04300 at 985.684 kb on - strand, within BPHYT_RS04300 at 986.017 kb on + strand, within BPHYT_RS04300 at 986.017 kb on + strand, within BPHYT_RS04300 at 986.018 kb on - strand, within BPHYT_RS04300 at 986.089 kb on + strand, within BPHYT_RS04300 at 986.090 kb on - strand, within BPHYT_RS04300 at 986.200 kb on - strand, within BPHYT_RS04300 at 986.529 kb on + strand, within BPHYT_RS04300 at 986.614 kb on + strand, within BPHYT_RS04300 at 986.920 kb on + strand, within BPHYT_RS04300 at 987.035 kb on - strand, within BPHYT_RS04300 at 987.035 kb on - strand, within BPHYT_RS04300 at 987.139 kb on + strand, within BPHYT_RS04300 at 987.139 kb on + strand, within BPHYT_RS04300 at 987.139 kb on + strand, within BPHYT_RS04300 at 987.220 kb on + strand at 987.280 kb on + strand at 987.281 kb on - strand at 987.281 kb on - strand at 987.498 kb on + strand at 987.538 kb on + strand at 987.538 kb on + strand at 987.538 kb on + strand at 987.538 kb on + strand at 987.539 kb on - strand at 987.539 kb on - strand at 987.539 kb on - strand at 987.543 kb on - strand at 987.677 kb on + strand, within BPHYT_RS04305 at 987.677 kb on + strand, within BPHYT_RS04305 at 988.086 kb on + strand, within BPHYT_RS04305
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 984,273 - BPHYT_RS04295 0.17 +2.4 984,286 + BPHYT_RS04295 0.19 +0.4 984,324 + BPHYT_RS04295 0.23 +0.6 984,371 + BPHYT_RS04295 0.29 -0.5 984,371 + BPHYT_RS04295 0.29 -0.0 984,371 + BPHYT_RS04295 0.29 -1.3 984,372 - BPHYT_RS04295 0.29 +1.4 984,372 - BPHYT_RS04295 0.29 +1.8 984,478 + BPHYT_RS04295 0.43 -0.8 984,478 + BPHYT_RS04295 0.43 +0.8 984,479 - BPHYT_RS04295 0.43 +1.1 984,623 + BPHYT_RS04295 0.61 +0.3 984,647 + BPHYT_RS04295 0.64 -0.5 984,698 + BPHYT_RS04295 0.71 -1.3 984,698 + BPHYT_RS04295 0.71 -0.7 984,699 - BPHYT_RS04295 0.71 -0.4 984,841 + BPHYT_RS04295 0.89 -1.3 984,841 + BPHYT_RS04295 0.89 +0.5 985,236 + BPHYT_RS04300 0.10 +2.1 985,236 + BPHYT_RS04300 0.10 +3.1 985,237 - BPHYT_RS04300 0.10 +1.0 985,281 + BPHYT_RS04300 0.12 -0.4 985,282 - BPHYT_RS04300 0.12 +1.8 985,282 - BPHYT_RS04300 0.12 +1.6 985,282 - BPHYT_RS04300 0.12 +1.1 985,330 + BPHYT_RS04300 0.14 +1.4 985,537 + BPHYT_RS04300 0.22 +0.6 985,537 + BPHYT_RS04300 0.22 -0.4 985,538 - BPHYT_RS04300 0.23 -0.4 985,540 + BPHYT_RS04300 0.23 +0.1 985,679 + BPHYT_RS04300 0.28 +2.1 985,679 + BPHYT_RS04300 0.28 +2.0 985,681 + BPHYT_RS04300 0.28 +1.3 985,681 + BPHYT_RS04300 0.28 +1.6 985,681 + BPHYT_RS04300 0.28 +2.3 985,682 - BPHYT_RS04300 0.28 +1.1 985,682 - BPHYT_RS04300 0.28 -0.8 985,683 + BPHYT_RS04300 0.28 +2.5 985,683 + BPHYT_RS04300 0.28 +0.7 985,683 + BPHYT_RS04300 0.28 +1.5 985,684 - BPHYT_RS04300 0.28 +3.1 985,684 - BPHYT_RS04300 0.28 +2.6 986,017 + BPHYT_RS04300 0.42 +1.6 986,017 + BPHYT_RS04300 0.42 +1.2 986,018 - BPHYT_RS04300 0.42 +1.5 986,089 + BPHYT_RS04300 0.45 +1.6 986,090 - BPHYT_RS04300 0.45 +3.6 986,200 - BPHYT_RS04300 0.50 +2.4 986,529 + BPHYT_RS04300 0.63 +2.9 986,614 + BPHYT_RS04300 0.66 +3.0 986,920 + BPHYT_RS04300 0.79 +2.9 987,035 - BPHYT_RS04300 0.84 +0.6 987,035 - BPHYT_RS04300 0.84 +1.3 987,139 + BPHYT_RS04300 0.88 +1.7 987,139 + BPHYT_RS04300 0.88 +1.3 987,139 + BPHYT_RS04300 0.88 +0.6 987,220 + +0.1 987,280 + +0.6 987,281 - +1.6 987,281 - +3.6 987,498 + +0.3 987,538 + -0.6 987,538 + +0.8 987,538 + +0.0 987,538 + +2.1 987,539 - -0.5 987,539 - +1.1 987,539 - +1.9 987,543 - +2.4 987,677 + BPHYT_RS04305 0.10 -0.3 987,677 + BPHYT_RS04305 0.10 +1.6 988,086 + BPHYT_RS04305 0.38 +0.6
Or see this region's nucleotide sequence