Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04095 and BPHYT_RS04100 are separated by 277 nucleotides BPHYT_RS04100 and BPHYT_RS04105 overlap by 4 nucleotides BPHYT_RS04105 and BPHYT_RS04110 are separated by 24 nucleotides
BPHYT_RS04095: BPHYT_RS04095 - SAM-dependent methyltransferase PhcB, at 934,374 to 935,192
_RS04095
BPHYT_RS04100: BPHYT_RS04100 - AraC family transcriptional regulator, at 935,470 to 936,000
_RS04100
BPHYT_RS04105: BPHYT_RS04105 - glyoxalase, at 935,997 to 936,413
_RS04105
BPHYT_RS04110: BPHYT_RS04110 - beta-glucosidase, at 936,438 to 938,126
_RS04110
Position (kb) 935
936
937 Strain fitness (log2 ratio) -2
-1
0
1 at 934.983 kb on + strand, within BPHYT_RS04095 at 935.002 kb on - strand, within BPHYT_RS04095 at 935.285 kb on + strand at 935.285 kb on + strand at 935.369 kb on - strand at 935.433 kb on + strand at 935.724 kb on + strand, within BPHYT_RS04100 at 936.008 kb on + strand at 936.027 kb on + strand at 936.028 kb on - strand at 936.028 kb on - strand at 936.060 kb on + strand, within BPHYT_RS04105 at 936.279 kb on + strand, within BPHYT_RS04105 at 936.543 kb on + strand at 936.548 kb on - strand at 936.637 kb on + strand, within BPHYT_RS04110 at 936.702 kb on + strand, within BPHYT_RS04110 at 936.705 kb on + strand, within BPHYT_RS04110 at 936.706 kb on - strand, within BPHYT_RS04110 at 936.706 kb on - strand, within BPHYT_RS04110 at 936.776 kb on + strand, within BPHYT_RS04110 at 936.778 kb on + strand, within BPHYT_RS04110 at 936.778 kb on + strand, within BPHYT_RS04110 at 936.809 kb on - strand, within BPHYT_RS04110
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 934,983 + BPHYT_RS04095 0.74 +0.1 935,002 - BPHYT_RS04095 0.77 +0.8 935,285 + +1.7 935,285 + -0.8 935,369 - -1.4 935,433 + -1.4 935,724 + BPHYT_RS04100 0.48 -0.4 936,008 + +0.3 936,027 + -1.6 936,028 - -1.4 936,028 - -1.3 936,060 + BPHYT_RS04105 0.15 -0.9 936,279 + BPHYT_RS04105 0.68 -0.3 936,543 + +0.1 936,548 - -0.5 936,637 + BPHYT_RS04110 0.12 -1.8 936,702 + BPHYT_RS04110 0.16 -0.0 936,705 + BPHYT_RS04110 0.16 -0.7 936,706 - BPHYT_RS04110 0.16 -0.5 936,706 - BPHYT_RS04110 0.16 -1.3 936,776 + BPHYT_RS04110 0.20 -0.6 936,778 + BPHYT_RS04110 0.20 +0.5 936,778 + BPHYT_RS04110 0.20 -0.4 936,809 - BPHYT_RS04110 0.22 +0.3
Or see this region's nucleotide sequence