Experiment: P. phyto PHYTO2 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03540 and BPHYT_RS03545 are separated by 102 nucleotides BPHYT_RS03545 and BPHYT_RS03550 are separated by 129 nucleotides
BPHYT_RS03540: BPHYT_RS03540 - peptidase C69, at 797,573 to 799,039
_RS03540
BPHYT_RS03545: BPHYT_RS03545 - apolipoprotein acyltransferase, at 799,142 to 799,993
_RS03545
BPHYT_RS03550: BPHYT_RS03550 - hypothetical protein, at 800,123 to 804,313
_RS03550
Position (kb) 799
800 Strain fitness (log2 ratio) -2
-1
0
1
2 at 798.369 kb on + strand, within BPHYT_RS03540 at 798.369 kb on + strand, within BPHYT_RS03540 at 798.369 kb on + strand, within BPHYT_RS03540 at 798.375 kb on + strand, within BPHYT_RS03540 at 798.516 kb on + strand, within BPHYT_RS03540 at 798.516 kb on + strand, within BPHYT_RS03540 at 798.517 kb on - strand, within BPHYT_RS03540 at 798.891 kb on + strand, within BPHYT_RS03540 at 798.900 kb on + strand at 798.901 kb on - strand at 798.922 kb on + strand at 799.046 kb on + strand at 799.047 kb on - strand at 799.047 kb on - strand at 799.047 kb on - strand at 799.094 kb on + strand at 799.094 kb on + strand at 799.094 kb on + strand at 799.094 kb on + strand at 799.095 kb on - strand at 799.096 kb on + strand at 799.096 kb on + strand at 799.096 kb on + strand at 799.097 kb on - strand at 799.097 kb on - strand at 799.341 kb on + strand, within BPHYT_RS03545 at 799.342 kb on - strand, within BPHYT_RS03545 at 799.342 kb on - strand, within BPHYT_RS03545 at 799.342 kb on - strand, within BPHYT_RS03545 at 799.342 kb on - strand, within BPHYT_RS03545 at 799.404 kb on + strand, within BPHYT_RS03545 at 799.404 kb on + strand, within BPHYT_RS03545 at 799.405 kb on - strand, within BPHYT_RS03545 at 799.608 kb on + strand, within BPHYT_RS03545 at 799.765 kb on - strand, within BPHYT_RS03545 at 799.818 kb on + strand, within BPHYT_RS03545 at 799.818 kb on + strand, within BPHYT_RS03545 at 799.818 kb on + strand, within BPHYT_RS03545 at 799.819 kb on - strand, within BPHYT_RS03545 at 799.819 kb on - strand, within BPHYT_RS03545 at 800.047 kb on + strand at 800.048 kb on - strand at 800.816 kb on - strand, within BPHYT_RS03550
Per-strain Table
Position Strand Gene LocusTag Fraction P. phyto PHYTO2 MOI 1 remove 798,369 + BPHYT_RS03540 0.54 -0.0 798,369 + BPHYT_RS03540 0.54 +1.2 798,369 + BPHYT_RS03540 0.54 +0.4 798,375 + BPHYT_RS03540 0.55 -1.0 798,516 + BPHYT_RS03540 0.64 -1.3 798,516 + BPHYT_RS03540 0.64 -1.1 798,517 - BPHYT_RS03540 0.64 -0.5 798,891 + BPHYT_RS03540 0.90 +0.4 798,900 + +0.4 798,901 - -1.6 798,922 + -0.7 799,046 + -0.5 799,047 - -0.7 799,047 - -1.6 799,047 - +0.8 799,094 + +0.4 799,094 + +0.4 799,094 + -0.4 799,094 + +0.4 799,095 - +0.4 799,096 + +2.3 799,096 + -1.4 799,096 + -1.5 799,097 - +0.5 799,097 - -1.5 799,341 + BPHYT_RS03545 0.23 -0.3 799,342 - BPHYT_RS03545 0.23 -0.8 799,342 - BPHYT_RS03545 0.23 -0.4 799,342 - BPHYT_RS03545 0.23 +0.3 799,342 - BPHYT_RS03545 0.23 -0.6 799,404 + BPHYT_RS03545 0.31 -2.0 799,404 + BPHYT_RS03545 0.31 -2.1 799,405 - BPHYT_RS03545 0.31 -2.5 799,608 + BPHYT_RS03545 0.55 -0.0 799,765 - BPHYT_RS03545 0.73 +0.1 799,818 + BPHYT_RS03545 0.79 +1.0 799,818 + BPHYT_RS03545 0.79 -1.5 799,818 + BPHYT_RS03545 0.79 +0.6 799,819 - BPHYT_RS03545 0.79 -1.9 799,819 - BPHYT_RS03545 0.79 -2.3 800,047 + +1.3 800,048 - -0.3 800,816 - BPHYT_RS03550 0.17 -0.7
Or see this region's nucleotide sequence